EY649926

Overview
NameEY649926
Unique NameEY649926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.867e-18
Identity = 76/225 (33.78%), Postives = 110/225 (48.89%), Query Frame = 1
Query:  184 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            RK +   +  S+     G+DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL +  ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   35 RKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAG--WFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEGYRIAGGP----------------LGEIVDPLYPGGS-FDPLGLAERPQAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.184e-18
Identity = 72/238 (30.25%), Postives = 114/238 (47.90%), Query Frame = 1
Query:  127 ETARQILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGF----EKYLGGSGDPAYPGRPLFNPLGL---------GKDEKSMKDFKLKEVKNGRLGMVGI 795
            ++++ +L   S      S+     VV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AML  +G      +G+A      T + WF+ G  P A   +++     TL   ++ LMG+ E +R+ D+ +P S   ++   +    E +   +G+  YPG   F+PL L           D   ++  KL E+K+ RL M+ +
Sbjct:   24 KSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMLAVLGI----FVGQAW-----TGIPWFEAGADPGAVAPFSFG----TLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.184e-18
Identity = 75/220 (34.09%), Postives = 106/220 (48.18%), Query Frame = 1
Query:  199 VVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            V +  S+     G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   37 VTKQVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 231          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.159e-18
Identity = 73/208 (35.10%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   53 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVAGGP----------------LGEVTDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.159e-18
Identity = 73/208 (35.10%), Postives = 103/208 (49.52%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL +D ++  + K+K +KNGRL M  ++G+  +  V
Sbjct:   53 GPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVVDPLYPGGS-FDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIV 235          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.159e-18
Identity = 73/208 (35.10%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P         +++  ++ LMG  E  R                     LG   DP YPG   F+PLGL +D +   + K+KE+KNGRL M  ++G+  +  V
Sbjct:   50 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVAGGP----------------LGEIVDPLYPGGS-FDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIV 232          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.159e-18
Identity = 73/208 (35.10%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DRP +    S+ + SYL G  PGDYG+D   +S DPE    F + + L   EVI+ R+AMLGA+G + PE+L K GL   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R       G++G               DP  PG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   52 GPDRPKYLGPFSEGTPSYLTGEFPGDYGWDTAAVSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLAKNGLKFGEAV--WFKAGAQIFSEGGLDYAGNPNLIHAQSILAIWACQVVLMGLIEGYR----VGGGTLGEGL------------DPLLPGGA-FDPLGLADDPEACAELKVKEIKNGRLAMFSMFGFFVQAIV 234          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 4.159e-18
Identity = 73/208 (35.10%), Postives = 102/208 (49.04%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   48 GPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 230          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.431e-18
Identity = 73/188 (38.83%), Postives = 97/188 (51.60%), Query Frame = 1
Query:  280 YLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAG-TYNYWAD--PYTLF---VLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            YL+G + GDYG+DP GL   PE        K+ A+ E+I+ R+AMLGA G I PE L K G      A+ WF+TG +   G T NY+    P  L    V E+ L+G AE+ R  +            L FE       D  +PG P F+PLGL KD +     K+KE+KNGRL M  + G+  +  V
Sbjct:   84 YLNGEVAGDYGYDPFGLGKKPENFA-----KYQAF-ELIHARWAMLGAAGFIIPEALNKYGANCGPEAV-WFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNG-----------LDFE-------DKLHPGGP-FDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYV 245          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.431e-18
Identity = 75/217 (34.56%), Postives = 107/217 (49.31%), Query Frame = 1
Query:  208 AASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            AA++     G DR L+    S +  SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+K GRL M+ ++G+  +  V
Sbjct:   42 AAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIV 233          
The following BLAST results are available for this feature:
BLAST of EY649926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_WHEAT1.867e-1833.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB4_SPIOL3.184e-1830.25Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB23_SOYBN3.184e-1834.09Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB27_TOBAC4.159e-1835.10Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB25_TOBAC4.159e-1835.10Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB23_APIGR4.159e-1835.10Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH4.159e-1835.10Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_MAIZE4.159e-1835.10Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB26_ARATH5.431e-1838.83Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB22_MAIZE5.431e-1834.56Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649926 ID=EY649926; Name=EY649926; organism=Citrus sinensis; type=EST; length=974bp
ATTGGTNACGCCTGCCAGTTCTGGTCCGGNATTCCCGGCTCGACCCCGCG
TCCGANAAACAGAGGAAAAAAGAAATTAAAAATGGCAACCCAAGCTTTGG
TTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGA
GCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGT
TGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGT
TGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCC
GGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGG
AGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTC
GTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGC
AAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGG
TGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACAC
TTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTC
CAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATT
CGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCTGGGAGACCTC
TATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTC
AAGCTCAAGGAAGTGAAGAATGGAAGATTGGGCATGGTGGGCATCTGGGG
GTACTTGNTCAAGGTCNNTGTACAGGAGTGGGCCNTACCCAGACCTATGG
GATCACTGGNCTGATCCTGTAAACACAATGGNTTGACTAGCCTCAAGTTC
ACTGAAAGAGAATTTTCTGGTCATGGCTGGGATNATTATNCCAGGCCTGN
ATCCCCACTCTGTCTATCTACTTT
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