EY649926

Overview
NameEY649926
Unique NameEY649926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length974
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.094e-18
Identity = 73/209 (34.93%), Postives = 98/209 (46.89%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  W    S  + +YL G  PGDYG+D  GLS DPE    + E       EVI+ R+A+LGA+G + PE+L   AG+   E    WF+ G  I   G  +Y   P  +          +++ LMG  E  R     N G  G               DP YPG   F+PLGL  D  +  + K+KE+KNGRL M   +G+  +  V
Sbjct:   41 GPDRAKWLGPFSTNTPAYLTGEFPGDYGWDTAGLSADPETFKKYREL------EVIHARWALLGALGILTPELLSTYAGVKFGEPV--WFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIV 224          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.094e-18
Identity = 75/225 (33.33%), Postives = 108/225 (48.00%), Query Frame = 1
Query:  184 RKGSFVVRAASTPPVKQGADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            RK     + AS+     G DR  +    S ++ SYL G  P DYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL +D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   36 RKTVTKAKPASSSSPWYGPDRVKYLGPFSGEAPSYLTGEFPSDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGIKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 235          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 7.094e-18
Identity = 73/208 (35.10%), Postives = 104/208 (50.00%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G+DR  +    S +  SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E                Y +  E  LG + D  YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   51 GSDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHCRWAMLGALGCVFPELLARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG---------------YRVAGEGPLGEAEDLLYPGGS-FDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 9.264e-18
Identity = 74/235 (31.49%), Postives = 108/235 (45.96%), Query Frame = 1
Query:  145 LGARSAQSPTGSSRKGS--FVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSD-PEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXVQEWAXP 840
            +G  S  +P+  S +    F   A ++  V   A+   WF  +   ++LDGS PGD+GFDPLGL+  PE    F E       E+ + R+AML   G + PE LG    +  +   A    G     G    W +  T+  +E   + FAE +R  +  +P           +KY GG+          F+PLG  KD    ++ KLKE+KNGRL M+   G+     VQ+ A P
Sbjct:   13 VGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAE---WFPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKE------SEIYHCRWAMLCVPGVLVPEALGLGNWVKAQEWAA-LPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEK---------KKYPGGA----------FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGF----CVQQSAYP 213          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.210e-17
Identity = 70/209 (33.49%), Postives = 99/209 (47.37%), Query Frame = 1
Query:  235 GADRPLW---FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADPYTLFV--------LEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G +R  W   ++   + +YL G  PGDYG+D  GLS DPE    + E       E+I+ R+AMLGA+G   PE+L K+G    E    WF+ G  I   G  +Y  +P  +          +++ LMG  E  R     N G  G               DP YPG   F+PLGL  D  +  + K+KE+KNGRL    ++G+  +  V
Sbjct:   38 GPNRAKWLGPYSENATPAYLTGEFPGDYGWDTAGLSADPETFKRYREL------ELIHARWAMLGALGCQTPELLAKSGTKFGEAV--WFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYR----VNGGPAGEGL------------DPLYPGES-FDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIV 221          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.580e-17
Identity = 72/208 (34.62%), Postives = 102/208 (49.04%), Query Frame = 1
Query:  235 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            G DR  +    S ++ SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+  + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:   52 GPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHCRWAMLGALGCVFPELFARNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAGGP----------------LGEVIDPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIV 234          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.064e-17
Identity = 68/192 (35.42%), Postives = 95/192 (49.48%), Query Frame = 1
Query:  277 SYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            SYL G  PGDYG+D  GLS DPE    F + + L   EVI+  +AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL  D ++  + K+KE+KNGRL M  ++G+  +  V
Sbjct:    8 SYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSTWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGP----------------LGEVTDPIYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIV 174          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.064e-17
Identity = 70/197 (35.53%), Postives = 98/197 (49.75%), Query Frame = 1
Query:  262 SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            S +S SYL G  PGDYG+D  GLS DPE    F + + L   EVI+ R+AMLGA+G + PE+L + G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMG  E  R                     LG   DP YPG   F+PLGL +  ++  + K+KE+KNGRL M  ++G+     V
Sbjct:   25 SGESPSYLTGEFPGDYGWDTAGLSADPET---FAKNREL---EVIHSRWAMLGALGCVFPELLSRNGVKFGEAV--WFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGP----------------LGEVVDPLYPGGS-FDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIV 196          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.696e-17
Identity = 72/200 (36.00%), Postives = 99/200 (49.50%), Query Frame = 1
Query:  256 FASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGK-AGLIPQETALAWFQTGV-IPPAGTYNYWADPYTL--------FVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLGKDEKSMKDFKLKEVKNGRLGMVGIWGYLXKVXV 822
            F+   +  YL G  PGDYG+D  GLS DP+    + E       E+I+ R+A+LGA+G + PE+L + AG+  Q     WF+ G  I   G  NY  +   +          +++ LMG AE  R    AN GS G   FL          D  YPG P F+PLGL  D  +  + K+KE+KNGRL M    G+  +  V
Sbjct:   45 FSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREI------ELIHARWALLGALGILTPELLSQYAGV--QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR----ANGGSEG---FLD-------DLDTLYPGGP-FDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIV 221          
BLAST of EY649926 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.520e-17
Identity = 75/239 (31.38%), Postives = 110/239 (46.03%), Query Frame = 1
Query:  142 ILGARSAQSPTGSSRKGSFVVRAASTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPA-GTYNYWADPYTLFVLEMALMGFAEHRRFQ----------DWANPGSMGRQYFLGFEKYLGGSGDPAYPGRPLFNPLGLG---------KDEKSMKDFKLKEVKNGRLGMVGI 795
            +LGA      T   R   FVV AA+  P K          +     +LDGSLPGD+GFDPLGL  DP     F+  KW    E+I+GR+AM   +G      +G+A      + + WF+ G  P A   +++     +L   ++ LMG+ E +R+           DWA P S   + F  F      +G+  YPG   F+PL L           D + ++  KL E+K+ RL M+ +
Sbjct:   27 LLGAHVTARVTTPKR---FVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVLGI----FVGQAW-----SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANF------TGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAM 237          
The following BLAST results are available for this feature:
BLAST of EY649926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB2_CHLMO7.094e-1834.93Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB23_PETSP7.094e-1833.33Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_SINAL7.094e-1835.10Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB121_HORVU9.264e-1831.49Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB2_CHLRE1.210e-1733.49Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB24_PETSP1.580e-1734.62Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_CUCSA2.064e-1735.42Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_PEA2.064e-1735.53Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2_DUNTE2.696e-1736.00Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB4B_SOLLC3.520e-1731.38Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-005-B05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649926 ID=EY649926; Name=EY649926; organism=Citrus sinensis; type=EST; length=974bp
ATTGGTNACGCCTGCCAGTTCTGGTCCGGNATTCCCGGCTCGACCCCGCG
TCCGANAAACAGAGGAAAAAAGAAATTAAAAATGGCAACCCAAGCTTTGG
TTTCATCATCTCTTACATCTTCAGTGGAGACTGCGAGACAAATTCTTGGA
GCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGAAAAGGTTCCTTTGT
TGTTAGGGCAGCTTCTACTCCTCCTGTTAAGCAAGGAGCAGACAGACCGT
TGTGGTTTGCATCCAAACAAAGCCTTTCATACTTGGATGGCAGCCTCCCC
GGAGACTATGGATTCGACCCACTTGGTCTCTCAGACCCTGAAGGCACAGG
AGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCGAGGTCATCAACGGTC
GTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCACCGGAGATTCTTGGC
AAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGCCTGGTTCCAAACCGG
TGTGATCCCCCCAGCGGGAACATACAACTACTGGGCAGACCCTTACACAC
TTTTCGTCCTGGAAATGGCACTCATGGGATTTGCCGAGCACCGGAGATTC
CAAGACTGGGCAAATCCAGGATCAATGGGCAGGCAATACTTCCTCGGATT
CGAGAAATACTTGGGAGGATCCGGCGATCCGGCTTACCCTGGGAGACCTC
TATTCAACCCTCTGGGTCTTGGGAAAGATGAGAAGTCAATGAAGGATTTC
AAGCTCAAGGAAGTGAAGAATGGAAGATTGGGCATGGTGGGCATCTGGGG
GTACTTGNTCAAGGTCNNTGTACAGGAGTGGGCCNTACCCAGACCTATGG
GATCACTGGNCTGATCCTGTAAACACAATGGNTTGACTAGCCTCAAGTTC
ACTGAAAGAGAATTTTCTGGTCATGGCTGGGATNATTATNCCAGGCCTGN
ATCCCCACTCTGTCTATCTACTTT
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