EY649897 | Citrus Genome Database

Overview


Name	EY649897
Unique Name	EY649897
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	940

Libraries


Library Name	Type
Sweet orange leaf, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_IGNH4 (30S ribosomal protein S5P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps5p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.555e-33
Identity = 71/156 (45.51%), Postives = 103/156 (66.03%), Query Frame = 2

Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            ++WVP T++GR+V+EGKI  + +++  +LPI E +I+D L+   LK EV+ +  VQK T AG+ TR +  VV+G+ DG VGLG+  +K++  AI+ A+  AKL++ PVR   G W    G PH+VP  V GK GSV V +  APRG G+VA  V +
Sbjct:    8 EEWVPRTRVGRMVKEGKITSIYELFEKNLPILEPEIVDYLVPD-LKHEVLDVSLVQKVTDAGRVTRLRVLVVIGNEDGLVGLGMGKAKQMRFAIQKALANAKLNITPVRRGCGSWECTCGEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDVAK 162

HSP 2 Score: 35.039 bits (79), Expect = 2.555e-33
Identity = 18/42 (42.86%), Postives = 25/42 (59.52%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKAPLSVW*RHMPFL 762
            +K VL++AGI DV T + G T+T  NF KA  +   +   FL
Sbjct:  161 AKAVLRYAGIKDVWTHTEGETRTTHNFAKATFNALKQTYKFL 202

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_AERPE (30S ribosomal protein S5P OS=Aeropyrum pernix GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.208e-33
Identity = 73/156 (46.79%), Postives = 102/156 (65.38%), Query Frame = 2

Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            + W P T++GRLV+EGKI+ +++I+  +LPI E +I+D L+   L  EV+ +  VQK T AG+ TRF+A VVVG+ DG+VGLG   +++   AI  AI  AKL++IPVR   G W    G  H+VP  V GK GSV V +  AP+G G+VA  V +
Sbjct:   12 EAWQPRTRVGRLVKEGKIKSIDEIFRRNLPILETEIVDYLLPG-LDHEVIDVSIVQKMTDAGRITRFRAVVVVGNKDGYVGLGKGKARQFRFAIEKAIRNAKLNIIPVRRGCGSWECTCGEAHSVPFTVRGKSGSVEVILKPAPKGTGLVAGDVAK 166

HSP 2 Score: 31.9574 bits (71), Expect = 3.208e-33
Identity = 15/30 (50.00%), Postives = 21/30 (70.00%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL+ AGI DV T ++G T+T  NF +A
Sbjct:  165 AKVVLRLAGISDVWTFTKGETRTSYNFARA 194

HSP 3 Score: 23.483 bits (49), Expect = 3.208e-33
Identity = 9/24 (37.50%), Postives = 13/24 (54.17%), Query Frame = 3

Query:  705 SWKLCQGTFECLVKTYAFLTPDFW 776
            S+   + T+  L  TY F+TP  W
Sbjct:  188 SYNFARATYLALRNTYRFVTPADW 211

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.338e-33
Identity = 71/154 (46.10%), Postives = 103/154 (66.88%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            W P T+LGRLV+EGKIR +++I+ ++  IKE +I+D L+   LK E++ I  VQ+QT AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVR   G W      PH+VP  V GK GSV V +  AP+G G+VA  V +
Sbjct:    9 WEPRTELGRLVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAK 161

HSP 2 Score: 32.3426 bits (72), Expect = 4.338e-33
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL+ AGI DV T +RG T+T  NF  A
Sbjct:  160 AKVVLRLAGIKDVWTQTRGDTRTTLNFAMA 189

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRCJ (30S ribosomal protein S5P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.650e-33
Identity = 71/154 (46.10%), Postives = 103/154 (66.88%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            W P T LGR+V+EGKIR +++I+ ++L IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  S++V  AI  A   AKL++ PVR   G W      PH+VP  V+GK GSV V +  AP+G G+VA  V +
Sbjct:    9 WEPKTALGRMVKEGKIRTIDEIFANNLLIKEPEIVDILLPG-LKQELLNLNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKSRQVRQAIEKATREAKLNITPVRRGCGSWKCSCDEPHSVPFVVSGKSGSVEVTLIPAPKGVGLVAGDVAK 161

HSP 2 Score: 31.9574 bits (71), Expect = 5.650e-33
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL+ AGI DV T +RG T+T  NF  A
Sbjct:  160 AKVVLRLAGIKDVWTKTRGDTRTTLNFALA 189

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRAR (30S ribosomal protein S5P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps5p PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 1.626e-32
Identity = 69/154 (44.81%), Postives = 104/154 (67.53%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            W P T+LGR+V+EGKIR +++++ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R+ F+A V VG+ DG+VG+G+  +++V  AI  A+  AKL++IPVR   G W      PH+VP  V GK GSV V +  AP+G G+VA  V +
Sbjct:    9 WEPRTELGRMVKEGKIRTIDEVFANNYIIKEPEIVDILVPG-LKQELLNVNIVQRQTHAGERSLFQAVVAVGNEDGYVGVGIGKARQVRQAIEKAVREAKLNLIPVRRGCGSWKCSCDEPHSVPFVVKGKSGSVEVTLIPAPKGVGLVAGDVAK 161

HSP 2 Score: 31.5722 bits (70), Expect = 1.626e-32
Identity = 15/30 (50.00%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL+ AG+ DV T +RG T+T  NF  A
Sbjct:  160 AKAVLRLAGVKDVWTHTRGDTRTTLNFALA 189

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRAE (30S ribosomal protein S5P OS=Pyrobaculum aerophilum GN=rps5p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.114e-32
Identity = 68/154 (44.16%), Postives = 103/154 (66.88%), Query Frame = 2

Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            W P T+LGR+V+EGKIR +++I+ ++  IKE +I+D L+   LK E++ +  VQ+QT AG+R +F+A V VG+ DG+VG+G+  +++V  AI  A   AKL+++PVR   G W      PH+VP  V GK GSV + +  AP+G G+VA  V +
Sbjct:   25 WEPRTELGRMVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQELLNVNLVQRQTHAGERNQFQAVVAVGNEDGYVGVGIGKARQVRQAIEKATREAKLNLVPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEITLIPAPKGVGLVAGDVAK 177

HSP 2 Score: 32.7278 bits (73), Expect = 2.114e-32
Identity = 16/30 (53.33%), Postives = 20/30 (66.67%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL+ AGI DV T +RG T+T  NF  A
Sbjct:  176 AKAVLRLAGIKDVWTKTRGDTRTTLNFAMA 205

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METTP (30S ribosomal protein S5P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps5p PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.757e-32
Identity = 67/157 (42.68%), Postives = 99/157 (63.06%), Query Frame = 2

Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            ++W+P T+LGRLV EG++   E+     LPIKE+QIID L+   L+DEV+ I  VQ+ T +G+R +F+  V+VG+ DG++G+G     +V  AI+  I  AKL+V+ +    G W    G+ HTVP  V+G  GSV + +  APRG G+ A  V +K
Sbjct:    8 EEWIPKTRLGRLVYEGQVTTFEEAVRSGLPIKEHQIIDLLLPG-LEDEVLDITMVQRMTDSGRRVKFRTTVIVGNRDGYIGIGHGKDVQVGGAIKKGIENAKLNVVRINRGCGSWECGCGQAHTVPYKVSGSSGSVRIYLMPAPRGLGLAAGDVAKK 163

HSP 2 Score: 36.1946 bits (82), Expect = 2.757e-32
Identity = 17/30 (56.67%), Postives = 22/30 (73.33%), Query Frame = 1

Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +KKV++ AGI DV T + GST+T  NF KA
Sbjct:  161 AKKVMEMAGIKDVWTRTEGSTRTTLNFAKA 190

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METBF (30S ribosomal protein S5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps5p PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.673e-32
Identity = 72/157 (45.86%), Postives = 99/157 (63.06%), Query Frame = 2

Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            ++W+P T+LG+LV EG++  +E+     LPI+E QIID L+   L+DEV+ I  VQ+ T +G+R +F+A V+VG+ +G+VGLG     +V  AIR AI  AKL +  +    G W    G PHTVP  VTGK GSV+V +  APRG GI A     K
Sbjct:    5 EEWIPKTRLGKLVMEGQVASMEEAIKSGLPIREPQIIDMLLPD-LEDEVLDINMVQRMTDSGRRVKFRATVIVGNRNGYVGLGQAKDVQVGPAIRKAIDAAKLDITYIHRGCGSWECACGLPHTVPYEVTGKAGSVSVTLIPAPRGLGIAAGNTATK 160

HSP 2 Score: 30.0314 bits (66), Expect = 4.673e-32
Identity = 15/28 (53.57%), Postives = 20/28 (71.43%), Query Frame = 1

Query:  643 KVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KVL+ AGI DV T + G+T++  NF KA
Sbjct:  160 KVLEKAGIKDVWTKTFGTTRSTLNFAKA 187

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METS5 (30S ribosomal protein S5P OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=rps5p PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 5.709e-32
Identity = 70/154 (45.45%), Postives = 103/154 (66.88%), Query Frame = 2

Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            ++W P TK+G+LV+EGKI  ++++Y  ++ I E +IID L+ + +K EV+ I  VQKQT AG+ +R+K  VV+G+ DG+V +GV  SK++  AI+ AI  AK+ VIPVR   G W    G  H++P  V+GK GS  V +  AP+G G+VA  V
Sbjct:   11 EEWKPRTKIGQLVKEGKITSIKELYARNMSIAEPEIIDVLLPN-MKYEVIDIGMVQKQTDAGELSRYKVLVVMGNYDGYVSIGVGKSKQLRVAIQKAIRDAKMHVIPVRRGCGSWECTCGESHSLPFLVSGKSGSAEVVLRPAPKGTGLVAGGV 163

HSP 2 Score: 32.7278 bits (73), Expect = 5.709e-32
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1

Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            K +L +AGI DV + SRG T+T  NF+ A
Sbjct:  165 KTLLTYAGIKDVWSFSRGETRTTDNFIMA 193

HSP 3 Score: 21.9422 bits (45), Expect = 5.709e-32
Identity = 8/18 (44.44%), Postives = 10/18 (55.56%), Query Frame = 3

Query:  729 FECLVKTYAFLTPDFWRR 782
            +  L  TY F+TP  W R
Sbjct:  195 YRALYNTYKFVTPVDWAR 212

[Close]

BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_SULSO (30S ribosomal protein S5P OS=Sulfolobus solfataricus GN=rps5p PE=3 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.082e-32
Identity = 68/154 (44.16%), Postives = 102/154 (66.23%), Query Frame = 2

Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            ++W P T +G LV+EGKI  +++++  +LPI E +I+D L+  KLK EV+ I  VQKQT AG+ +R+K  V++G+ DG+V +G   +K++  AI+ AI  AK+++IPVR   G W    G PH++P  V GK GSV V +  AP+G G+V   V
Sbjct:   11 EEWKPRTSIGSLVKEGKISSIKELFDRNLPITEPEIVDVLLP-KLKYEVVDIKVVQKQTDAGEISRYKVLVIMGNMDGYVSIGTGKAKQLRVAIQKAIRDAKMNIIPVRRGCGSWQCTCGEPHSLPFKVVGKAGSVEVDLLPAPKGTGLVVGSV 163

HSP 2 Score: 31.5722 bits (70), Expect = 6.082e-32
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 1

Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKAPLS 735
            K +L +AGI D  ++++G T+T  NFV+A  S
Sbjct:  165 KTLLTYAGIKDAWSTTKGETRTTENFVRAGYS 196

The following BLAST results are available for this feature:

BLAST of EY649897 vs. ExPASy Swiss-Prot

BLAST of EY649897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
RS5_IGNH4	2.555e-33	45.51	30S ribosomal protein S5P OS=Ignicoccus hospitalis...	[more]
RS5_AERPE	3.208e-33	46.79	30S ribosomal protein S5P OS=Aeropyrum pernix GN=r...	[more]
RS5_PYRIL	4.338e-33	46.10	30S ribosomal protein S5P OS=Pyrobaculum islandicu...	[more]
RS5_PYRCJ	5.650e-33	46.10	30S ribosomal protein S5P OS=Pyrobaculum calidifon...	[more]
RS5_PYRAR	1.626e-32	44.81	30S ribosomal protein S5P OS=Pyrobaculum arsenatic...	[more]
RS5_PYRAE	2.114e-32	44.16	30S ribosomal protein S5P OS=Pyrobaculum aerophilu...	[more]
RS5_METTP	2.757e-32	42.68	30S ribosomal protein S5P OS=Methanosaeta thermoph...	[more]
RS5_METBF	4.673e-32	45.86	30S ribosomal protein S5P OS=Methanosarcina barker...	[more]
RS5_METS5	5.709e-32	45.45	30S ribosomal protein S5P OS=Metallosphaera sedula...	[more]
RS5_SULSO	6.082e-32	44.16	30S ribosomal protein S5P OS=Sulfolobus solfataric...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C1-100-004-G06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY649897 ID=EY649897; Name=EY649897; organism=Citrus sinensis; type=EST; length=940bp
CTCGCATTTTTCACTCTCCCAAATCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGATGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAATAAGATAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGATCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAATGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGGTTC
TGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAGAAAGTGCT
GCAGTTTGCTGGTATTGACGATGTTATCACATCTTCTCGTGGGTCGACCA
AGACTCTTGGAAACTTTGTCAAGGCACCTTTGAGTGTTTGGTGAAGACAT
ATGCCTTTCTTACACCTGATTTCTGGAGGAGACTCGGTTTGTGAAATCTC
ATACCAGAGTACACAGAATCTGTGACGCCAAAGCCCATCACCAAGCAGTC
ATACAGGAGGGGGTCAAGGTGAACTTTAGCTCTTAGGCTGCTGGAAAGGG
AGACATAAAAGGAAGGGATTGGGTGACTCTTAGATAACTT