EY649897

Overview
NameEY649897
Unique NameEY649897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_STAMF (30S ribosomal protein S5P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 8.531e-31
Identity = 67/151 (44.37%), Postives = 100/151 (66.23%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVA 628
            + WVP T++G++V EGKI  L++I+  +LP+ E +I+D L+   LK E + +  VQK T AG+R+RF+  VVVG+ DG VG+G   +++   A+R A+  AKL++ PVR   G W  + G PH++P  V GK GSV V +  AP+G G+VA
Sbjct:   12 ETWVPRTRVGKMVVEGKITSLKEIFDRNLPLLEPEIVDYLLPD-LKYERLDVGIVQKVTDAGRRSRFRVVVVVGNEDGFVGVGSGKARQYLVALRKALRNAKLNITPVRRGCGSWECRCGEPHSIPFTVQGKSGSVVVVLKPAPKGTGLVA 161          

HSP 2 Score: 33.113 bits (74), Expect = 8.531e-31
Identity = 17/30 (56.67%), Postives = 20/30 (66.67%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL+ AGI DV T + G TKT  NF KA
Sbjct:  165 AKAVLRMAGIKDVWTETFGKTKTTLNFAKA 194          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRFU (30S ribosomal protein S5P OS=Pyrococcus furiosus GN=rps5p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.880e-30
Identity = 69/160 (43.12%), Postives = 96/160 (60.00%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            D+W P TKLG +V+EG+I  + +I+     IKE +IID L   +  +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   KEV  AIR AI  AKL++I ++   G W  +  RPH+VP  V GK GSV VR+   PRG G+V   V +K
Sbjct:   14 DEWEPKTKLGMMVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEVLDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGKEVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKK 173          

HSP 2 Score: 32.3426 bits (72), Expect = 1.880e-30
Identity = 14/29 (48.28%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KK+L+ AG+ DV + + G T+T  NF KA
Sbjct:  172 KKILRLAGVQDVWSQTFGETRTTVNFAKA 200          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METHJ (30S ribosomal protein S5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps5p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.886e-30
Identity = 64/156 (41.03%), Postives = 99/156 (63.46%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            +WVP+T LGR+V+ G+I+ +++I     PIKE +I+D  +   L DEV+ I  VQ+ T +G+R +F+A VVVG+ DG++G G     +V  AI+ AI+ AK++++ VR   G W      PH++P  VTG  GSV V +  AP+G G+V   + +K
Sbjct:    7 EWVPLTGLGRMVQAGEIKSIDEILSSGKPIKEPEIVDAFLPD-LVDEVLDINMVQRMTDSGRRVKFRAVVVVGNRDGYIGFGQGKDAQVGDAIKKAIVSAKINLVKVRRGCGSWECGCSNPHSIPMLVTGDAGSVRVTLRPAPQGIGLVTGDIGKK 161          

HSP 2 Score: 32.3426 bits (72), Expect = 1.886e-30
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KKVL+ AGI DV   ++G T+T  N+ KA
Sbjct:  160 KKVLELAGIRDVWAQTQGQTRTTINYAKA 188          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METMJ (30S ribosomal protein S5P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps5p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.886e-30
Identity = 65/157 (41.40%), Postives = 99/157 (63.06%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            ++W+P+T LGR+V  G+I  ++++     PIKE QI+D L+   L+DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VG G     +V  AI+ AI+ AKL++I V    G W       H++P  VTGK GSV V +  AP+G G+V   +P+K
Sbjct:    6 EEWIPLTGLGRMVAAGEITSIDEVLASGRPIKEPQIVDLLLPD-LEDEVLDINMVQRMTDSGRRVKFRTVVVVGNRNGYVGFGQGKDVQVGNAIQKAIVNAKLNLIKVSRGCGSWECGCETAHSIPIEVTGKAGSVKVTLKPAPQGIGLVTGDIPKK 161          

HSP 2 Score: 32.7278 bits (73), Expect = 1.886e-30
Identity = 16/29 (55.17%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KKVL  AGI DV   +RG T+T  N+ KA
Sbjct:  160 KKVLMLAGIKDVWAFNRGQTRTTINYAKA 188          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METM6 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps5p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.449e-30
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRM--GYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR+  G W    G PH++P    G CGSV V +  APRG G+VA  V +
Sbjct:   18 EAWEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAK 172          

HSP 2 Score: 28.1054 bits (61), Expect = 2.449e-30
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL  AGI D  T + G T+T  NF +A
Sbjct:  171 AKAVLGLAGIKDAWTKTFGDTRTTYNFAEA 200          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRAB (30S ribosomal protein S5P OS=Pyrococcus abyssi GN=rps5p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.187e-30
Identity = 67/160 (41.88%), Postives = 96/160 (60.00%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            D+W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++   G W  +  RPH+VP  V GK GSV V++   PRG G+V   V +K
Sbjct:   14 DEWQPKTKLGMLVKEGQITDIHEIFRKGYQIKEPEIIDVLLPEVNARENQEILDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFTVEGKEGSVRVKLIPGPRGLGLVIGDVGKK 173          

HSP 2 Score: 33.113 bits (74), Expect = 3.187e-30
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KK+L+ AGI DV + + G T+T  NF KA
Sbjct:  172 KKILRLAGIQDVWSQTLGETRTTVNFAKA 200          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METM7 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps5p PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.189e-30
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRM--GYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR+  G W    G PH++P    G CGSV V +  APRG G+VA  V +
Sbjct:   18 EAWEPKTQIGRMVKEGTISDINYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRIGCGSWECGCGYPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAK 172          

HSP 2 Score: 28.1054 bits (61), Expect = 3.189e-30
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL  AGI D  T + G T+T  NF +A
Sbjct:  171 AKAVLGLAGIKDAWTKTFGDTRTTYNFAEA 200          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METMP (30S ribosomal protein S5P OS=Methanococcus maripaludis GN=rps5p PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 3.190e-30
Identity = 68/156 (43.59%), Postives = 101/156 (64.74%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRM--GYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A VVVG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR+  G W    G PH++P    G CGSV V +  APRG G+VA  V +
Sbjct:   14 EAWEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVVVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFTAKGACGSVKVELLPAPRGVGLVAGNVAK 168          

HSP 2 Score: 27.7202 bits (60), Expect = 3.190e-30
Identity = 13/30 (43.33%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL  AG+ D  T + G T+T  NF +A
Sbjct:  167 AKAVLGLAGVKDAWTKTFGDTRTTYNFAEA 196          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METTH (30S ribosomal protein S5P OS=Methanobacterium thermoautotrophicum GN=rps5p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.193e-30
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRMGY--WGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            ++W P T+LGRLV+EG I  +++I+    PI E +IID L+   L++EV+ +  VQ+  ++G++  F+  V VG+ DG+VGLG   ++EV  AIR A+  AK ++I VR G   WG   GR HTVP  V+GK GSV V +  AP G G+    V
Sbjct:    8 EEWEPRTQLGRLVKEGVITSIDEIFEEGHPIMELEIIDALLPD-LEEEVIDVNLVQRMHKSGRKVNFRVIVAVGNKDGYVGLGQGKAREVGPAIRKAVDDAKFNIIKVRRGCGDWGCVCGREHTVPFKVSGKSGSVRVTLIPAPGGVGLAIGDV 160          

HSP 2 Score: 33.113 bits (74), Expect = 3.193e-30
Identity = 14/29 (48.28%), Postives = 21/29 (72.41%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            K +++ AGIDDV + +RG T+T  NF +A
Sbjct:  162 KTIMRLAGIDDVWSHTRGQTQTTVNFARA 190          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRHO (30S ribosomal protein S5P OS=Pyrococcus horikoshii GN=rps5p PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.150e-30
Identity = 68/160 (42.50%), Postives = 96/160 (60.00%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTL---IGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            D+W P TKLG LV+EG+I  + +I+     IKE +IID L   +  +   E++ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AKL++I ++   G W  +  RPH+VP  V GK GSV VR+   PRG G+V   V +K
Sbjct:   14 DEWQPRTKLGMLVKEGQITDIHEIFRRGYQIKEPEIIDVLLPEVNARENQEIIDIALTVRMTDSGRRVRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKLNIIEIKRGCGSWECRCRRPHSVPFAVEGKEGSVRVRLIPGPRGLGLVIGDVGKK 173          

HSP 2 Score: 32.7278 bits (73), Expect = 4.150e-30
Identity = 15/29 (51.72%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KK+L+ AGI DV + + G T+T  NF KA
Sbjct:  172 KKILRLAGIQDVWSQTFGETRTTVNFAKA 200          
The following BLAST results are available for this feature:
BLAST of EY649897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS5_STAMF8.531e-3144.3730S ribosomal protein S5P OS=Staphylothermus marin... [more]
RS5_PYRFU1.880e-3043.1330S ribosomal protein S5P OS=Pyrococcus furiosus G... [more]
RS5_METHJ1.886e-3041.0330S ribosomal protein S5P OS=Methanospirillum hung... [more]
RS5_METMJ1.886e-3041.4030S ribosomal protein S5P OS=Methanoculleus marisn... [more]
RS5_METM62.449e-3043.5930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_PYRAB3.187e-3041.8830S ribosomal protein S5P OS=Pyrococcus abyssi GN=... [more]
RS5_METM73.189e-3043.5930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METMP3.190e-3043.5930S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_METTH3.193e-3043.5130S ribosomal protein S5P OS=Methanobacterium ther... [more]
RS5_PYRHO4.150e-3042.5030S ribosomal protein S5P OS=Pyrococcus horikoshii... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-G06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649897 ID=EY649897; Name=EY649897; organism=Citrus sinensis; type=EST; length=940bp
CTCGCATTTTTCACTCTCCCAAATCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGATGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAATAAGATAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGATCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAATGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGGTTC
TGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAGAAAGTGCT
GCAGTTTGCTGGTATTGACGATGTTATCACATCTTCTCGTGGGTCGACCA
AGACTCTTGGAAACTTTGTCAAGGCACCTTTGAGTGTTTGGTGAAGACAT
ATGCCTTTCTTACACCTGATTTCTGGAGGAGACTCGGTTTGTGAAATCTC
ATACCAGAGTACACAGAATCTGTGACGCCAAAGCCCATCACCAAGCAGTC
ATACAGGAGGGGGTCAAGGTGAACTTTAGCTCTTAGGCTGCTGGAAAGGG
AGACATAAAAGGAAGGGATTGGGTGACTCTTAGATAACTT
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