EY649897

Overview
NameEY649897
Unique NameEY649897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METS3 (30S ribosomal protein S5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps5p PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.052e-30
Identity = 67/154 (43.51%), Postives = 98/154 (63.64%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRMGY--WGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            D+W P TK+G+LV+EG I  +++I+   LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   +KEV  AIR A+  AK ++I VR G   WG   G+ HTVP  V GK  SV+V +  AP G G+V   V
Sbjct:    6 DEWEPKTKMGKLVKEGTITDIDEIFEKGLPIMELEIVDALVPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNKNGYVGLGQGKAKEVGPAIRKAVDNAKYNLIKVRRGCGDWGCVCGKEHTVPFKVQGKASSVSVSLMPAPAGVGLVVGDV 158          

HSP 2 Score: 28.4906 bits (62), Expect = 7.052e-30
Identity = 14/29 (48.28%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            K +L  AGI DV + S G T+T  NF  A
Sbjct:  160 KTILNLAGIKDVWSQSFGQTQTTVNFANA 188          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_UNCMA (30S ribosomal protein S5P OS=Uncultured methanogenic archaeon RC-I GN=rps5p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 7.054e-30
Identity = 70/155 (45.16%), Postives = 96/155 (61.94%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            W+P T+LG++V EGKI  +E+ +   LPIKEYQI+D L+   L DEV+ I  VQ+ T +G+R +F+  VVVG+ +G+VGL      +V  AIR AI  AKL++I V    G W    G  HTVP  V G+ GS+ V +  APRG G+ A    +K
Sbjct:   12 WIPKTRLGKMVAEGKITTMEEAFETGLPIKEYQIVDALLPD-LVDEVLDISMVQRMTDSGRRVKFRTTVVVGNGNGYVGLAQGKGVQVGPAIRKAIENAKLNIIKVARGCGSWECGCGLTHTVPSQVEGRAGSLKVVLMPAPRGLGLAAGGPAKK 165          

HSP 2 Score: 29.261 bits (64), Expect = 7.054e-30
Identity = 14/30 (46.67%), Postives = 19/30 (63.33%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +KKVL+ AG  DV + + G T+T  NF  A
Sbjct:  163 AKKVLEMAGYKDVWSRTEGETRTTINFALA 192          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METM5 (30S ribosomal protein S5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps5p PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.554e-29
Identity = 67/156 (42.95%), Postives = 100/156 (64.10%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRM--GYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            + W P T++GR+V+EG I  +  I    LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R R++A V VG+ +G+VG+G+  SKEV  AIR AI  AKLS+I VR+  G W    G PH++P    G CGSV V +  APRG G+VA  V +
Sbjct:   18 EAWEPKTQIGRMVKEGTISDISYIMDKGLPLLEPEIVDALLPD-LEEQVLDVKLVQRMHKSGRRARYRATVAVGNKNGYVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRVGCGSWECGCGSPHSIPFAAKGACGSVKVELLPAPRGVGLVAGNVAK 172          

HSP 2 Score: 27.7202 bits (60), Expect = 1.554e-29
Identity = 13/30 (43.33%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL  AG+ D  T + G T+T  NF +A
Sbjct:  171 AKAVLGLAGVKDAWTKTFGDTRTTFNFAEA 200          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_SULAC (30S ribosomal protein S5P OS=Sulfolobus acidocaldarius GN=rps5p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.795e-29
Identity = 63/154 (40.91%), Postives = 101/154 (65.58%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            + W P TK+G+L++EGKI  +++++  +LPI E +I+D L+  KL+ +++ I  VQKQT AG+ +R+K  +V+G+ DG++  G   +K++  AI+ AI  AK+ +IPVR   G W    G  H++P  V+GK GSV V +  AP+G G+V   V
Sbjct:   11 EDWKPRTKVGQLIKEGKINSMKELFERNLPIVEPEIVDVLLP-KLRYDIVDIGIVQKQTDAGELSRYKVLIVMGNMDGYISYGTGKAKQLRVAIQKAIRDAKMRIIPVRRGCGSWECTCGESHSLPFIVSGKAGSVEVTLLPAPKGTGLVVGSV 163          

HSP 2 Score: 29.6462 bits (65), Expect = 1.795e-29
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            K  L  AG+ DV + ++GST T  NF+KA
Sbjct:  165 KTFLSLAGLKDVWSRTKGSTYTHENFIKA 193          

HSP 3 Score: 21.557 bits (44), Expect = 1.795e-29
Identity = 8/22 (36.36%), Postives = 12/22 (54.55%), Query Frame = 3
Query:  720 QGTFECLVKTYAFLTPDFWRRL 785
            +  +  L  TY F+TP  W R+
Sbjct:  192 KAAYIALYNTYRFVTPVDWGRM 213          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PYRKO (30S ribosomal protein S5P OS=Pyrococcus kodakaraensis GN=rps5p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.022e-29
Identity = 65/160 (40.62%), Postives = 97/160 (60.62%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGH---KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            ++W P TKLGRLV+EG+I  + +I+     IKE +I+D L+     +   EV+ I    + T +G+R RF+    VG+ DG+VGLG+   +EV  AIR AI  AK+++I ++   G W  +  RPH++P  V GK GSV V++   PRG G+V   V +K
Sbjct:   13 EEWEPKTKLGRLVKEGQITDIHEIFRKGYQIKEPEIVDVLLPEVNLRENQEVLDIALTVRMTDSGRRIRFRVLAAVGNRDGYVGLGIGHGREVGIAIRKAINYAKMNIIEIKRGCGSWECRCRRPHSIPFAVEGKEGSVRVKLMPGPRGLGLVIGDVGKK 172          

HSP 2 Score: 31.9574 bits (71), Expect = 2.022e-29
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KK+L  AG+ DV + + G T+T  NF KA
Sbjct:  171 KKILTLAGVQDVWSQTLGETRTTVNFAKA 199          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METJA (30S ribosomal protein S5P OS=Methanocaldococcus jannaschii GN=rps5p PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.638e-29
Identity = 65/156 (41.67%), Postives = 102/156 (65.38%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            D+W P T +GR+V+EG+I  ++ I  ++LPI E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A VVVG+ +G+VG+G   +KEV  AIR AI  AK ++I V+   G W    G PH++P    GKCGS  + +  AP+G G+VA  V +
Sbjct:    6 DEWEPKTTIGRMVKEGQITDIDYILDNNLPILEPEIVDALLPD-LEEKVLDVKLVQRMHKSGRRARFRATVVVGNRNGYVGVGKGKAKEVGPAIRKAIAQAKKNIIRVKRGCGSWECGCGTPHSIPYKGYGKCGSTAIEILPAPKGVGLVAGDVAK 160          

HSP 2 Score: 28.8758 bits (63), Expect = 2.638e-29
Identity = 15/30 (50.00%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL  AGI DV T + G T+T  NF  A
Sbjct:  159 AKAVLGLAGIKDVWTKTFGETRTTYNFAMA 188          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_HALMA (30S ribosomal protein S5P OS=Haloarcula marismortui GN=rps5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.476e-29
Identity = 63/155 (40.65%), Postives = 90/155 (58.06%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            W P T+LG+ V EG+I  +++     LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  V VG+ DG +G       +V  AI+ AI +AKL++I V    G W    GRPHTV     GK GSV V +  APRG G+      RK
Sbjct:    7 WEPRTRLGKQVVEGEIDSMQEALNSGLPLKESEVVDQLVPD-LEDEVLDINMVQRMTDSGRRVKFRCVVAVGNRDGLIGYAEGRDDQVGGAIQKAIDIAKLNIIDVSRGCGSWECGCGRPHTVALRTEGKAGSVEVELQPAPRGLGLAGGETVRK 160          

HSP 2 Score: 37.7354 bits (86), Expect = 4.476e-29
Identity = 18/34 (52.94%), Postives = 24/34 (70.59%), Query Frame = 1
Query:  625 GG*GSKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            GG   +KVL+ AGI+D+ T S G+T+T  NF KA
Sbjct:  154 GGETVRKVLELAGIEDIWTRSSGNTRTTVNFAKA 187          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METLZ (30S ribosomal protein S5P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps5p PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.479e-29
Identity = 66/155 (42.58%), Postives = 94/155 (60.65%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            WVPVT LG+ V  G+    ++I     PIKE  I+D ++   L DEV+ I  +Q+ T +G+R +F+A VV+G+ +G+VG G     +V TAI+ AI  AKL+++ VR   G W    G  H+VP  VTGK GSV V +  AP+G G+V   V +K
Sbjct:    8 WVPVTGLGKKVMAGEFASFDEILASGQPIKEAGIVDAMLPD-LVDEVLCIDMMQRMTDSGRRIKFRAVVVIGNKNGYVGFGQGRDVQVGTAIKKAITNAKLNIVKVRRGCGSWECGCGMKHSVPMEVTGKAGSVAVTLKPAPKGIGLVTGDVGKK 161          

HSP 2 Score: 33.113 bits (74), Expect = 4.479e-29
Identity = 16/29 (55.17%), Postives = 20/29 (68.97%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KKVL  AGI DV  ++ G+T+T  NF KA
Sbjct:  160 KKVLTLAGIQDVWVNTSGNTRTTLNFAKA 188          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PICTO (30S ribosomal protein S5P OS=Picrophilus torridus GN=rps5p PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 9.868e-29
Identity = 67/154 (43.51%), Postives = 97/154 (62.99%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            ++W P T+LGRLV  G+I+ + +     LP+KEYQI+D LI   LKDEV+ I   Q+ T +G+R  +    VVG+ +G+VG+G   +KE A AI+ AI  AKL++I ++   G W    G+PHT+P  V GK GSV+V +  AP+G G+    V
Sbjct:    3 EEWTPRTELGRLVANGEIKTISEALHSKLPLKEYQIVDYLIPD-LKDEVINIERAQRMTDSGRRMNYSITAVVGNGNGYVGVGRGKAKEAAPAIKKAIDNAKLNIIEIKRGCGSWECGCGKPHTLPFLVNGKSGSVSVTLKPAPQGVGLAVGDV 155          

HSP 2 Score: 26.5646 bits (57), Expect = 9.868e-29
Identity = 13/29 (44.83%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            K +L+ AGIDD    + G TKT  N+  A
Sbjct:  157 KVILRMAGIDDAWGFAAGHTKTTVNYALA 185          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_HALSA (30S ribosomal protein S5P OS=Halobacterium salinarium GN=rps5p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 9.879e-29
Identity = 63/149 (42.28%), Postives = 90/149 (60.40%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGI 622
            D W P T+LG LV++G++  + +     LP+KE +I+D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ DG+VG       +V  AI+ AI +AKL++I V    G W    GRPHTV    TGK GSV V +  APRG G+
Sbjct:    5 DTWQPKTRLGGLVQDGEVEDMSEALDTGLPLKEPEIVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRDGYVGYAEGRDDQVGGAIQKAIEVAKLNIIDVSRGCGSWECGCGRPHTVALKSTGKAGSVDVELMPAPRGLGL 152          

HSP 2 Score: 36.5798 bits (83), Expect = 9.879e-29
Identity = 19/34 (55.88%), Postives = 22/34 (64.71%), Query Frame = 1
Query:  625 GG*GSKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            GG   + VL+ AGIDDV T S G T+T  NF KA
Sbjct:  154 GGETVQHVLELAGIDDVWTRSSGKTRTTVNFAKA 187          
The following BLAST results are available for this feature:
BLAST of EY649897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS5_METS37.052e-3043.5130S ribosomal protein S5P OS=Methanobrevibacter sm... [more]
RS5_UNCMA7.054e-3045.1630S ribosomal protein S5P OS=Uncultured methanogen... [more]
RS5_METM51.554e-2942.9530S ribosomal protein S5P OS=Methanococcus maripal... [more]
RS5_SULAC1.795e-2940.9130S ribosomal protein S5P OS=Sulfolobus acidocalda... [more]
RS5_PYRKO2.022e-2940.6330S ribosomal protein S5P OS=Pyrococcus kodakaraen... [more]
RS5_METJA2.638e-2941.6730S ribosomal protein S5P OS=Methanocaldococcus ja... [more]
RS5_HALMA4.476e-2940.6530S ribosomal protein S5P OS=Haloarcula marismortu... [more]
RS5_METLZ4.479e-2942.5830S ribosomal protein S5P OS=Methanocorpusculum la... [more]
RS5_PICTO9.868e-2943.5130S ribosomal protein S5P OS=Picrophilus torridus ... [more]
RS5_HALSA9.879e-2942.2830S ribosomal protein S5P OS=Halobacterium salinar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-G06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649897 ID=EY649897; Name=EY649897; organism=Citrus sinensis; type=EST; length=940bp
CTCGCATTTTTCACTCTCCCAAATCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGATGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAATAAGATAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGATCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAATGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGGTTC
TGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAGAAAGTGCT
GCAGTTTGCTGGTATTGACGATGTTATCACATCTTCTCGTGGGTCGACCA
AGACTCTTGGAAACTTTGTCAAGGCACCTTTGAGTGTTTGGTGAAGACAT
ATGCCTTTCTTACACCTGATTTCTGGAGGAGACTCGGTTTGTGAAATCTC
ATACCAGAGTACACAGAATCTGTGACGCCAAAGCCCATCACCAAGCAGTC
ATACAGGAGGGGGTCAAGGTGAACTTTAGCTCTTAGGCTGCTGGAAAGGG
AGACATAAAAGGAAGGGATTGGGTGACTCTTAGATAACTT
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