EY649897

Overview
NameEY649897
Unique NameEY649897
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_META3 (30S ribosomal protein S5P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps5p PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.673e-28
Identity = 67/156 (42.95%), Postives = 98/156 (62.82%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            D W P T++G+ V+EG I  ++ I  + LP+ E +I+D L+   L+++V+ +  VQ+  ++G+R RF+A  VVG+ +G VG+G+  SKEV  AIR AI  AKLS+I VR   G W    G  H++P    G CGSV V +  APRG G+VA  V +
Sbjct:   11 DAWEPKTQVGKKVKEGTITDIDYIIDNGLPLLEPEIVDALLPD-LEEQVLDVSLVQRMHKSGRRARFRATAVVGNRNGFVGVGMGKSKEVGPAIRKAIAHAKLSLIKVRTGCGSWECGCGTAHSIPFAAKGSCGSVKVELLPAPRGVGLVAGNVAK 165          

HSP 2 Score: 27.7202 bits (60), Expect = 1.673e-28
Identity = 14/30 (46.67%), Postives = 18/30 (60.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +K VL  AGI D+ T + G T+T  NF  A
Sbjct:  164 AKAVLGLAGIKDIWTKTFGDTRTTYNFAIA 193          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METB6 (30S ribosomal protein S5P OS=Methanoregula boonei (strain 6A8) GN=rps5p PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.344e-27
Identity = 58/156 (37.18%), Postives = 94/156 (60.26%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPRK 646
            +W PVT LG+ V  G+I+ ++Q+     PIKE +I+D  +   L+DEV+ I  +Q+ T +G+R +F+A V+VG+ +G++G G     +V  AI+ AI  AK++++ VR   G W       H++P  V G  GSV V +  AP+G G+V   + +K
Sbjct:    7 EWRPVTGLGKQVASGEIKSIDQVLESGRPIKEPEIVDMFLPD-LEDEVLDIAMMQRMTDSGRRVQFRAVVIVGNRNGYIGFGQGKDVQVGDAIKKAITKAKMNLVKVRRGCGSWECGCAVLHSIPMQVEGTAGSVRVTLKPAPQGIGLVTGDISKK 161          

HSP 2 Score: 36.5798 bits (83), Expect = 2.344e-27
Identity = 18/30 (60.00%), Postives = 21/30 (70.00%), Query Frame = 1
Query:  637 SKKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            SKKVL+ AGI D  T +RG T+T  NF KA
Sbjct:  159 SKKVLELAGIKDAWTFARGQTRTTINFAKA 188          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_METST (30S ribosomal protein S5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps5p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.481e-26
Identity = 64/154 (41.56%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRMGY--WGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARV 637
            + W P T+LGR V++G+I  ++QI    LPI E +I+D L+   L++EVM +  VQ+  ++G++  F+  V VG+ +G+VGLG   S+EV  AIR A+  AK ++I VR G   WG   GR HTVP  + GK  SV+  +  AP G G+    V
Sbjct:   20 ENWEPKTELGRKVKDGEITDIDQILDKGLPIMELEIVDALLPD-LEEEVMDVNLVQRMHKSGRKVNFRVIVAVGNRNGYVGLGQGKSQEVGPAIRKAVDAAKYNLIKVRRGCGDWGCGCGRRHTVPFKIEGKMSSVSATLIPAPAGVGLAIGNV 172          

HSP 2 Score: 25.409 bits (54), Expect = 1.481e-26
Identity = 13/29 (44.83%), Postives = 16/29 (55.17%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            K +L  AGI DV +   G T+T  NF  A
Sbjct:  174 KTILSLAGIADVWSMCSGQTQTTINFAGA 202          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_NANEQ (30S ribosomal protein S5P OS=Nanoarchaeum equitans GN=rps5p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 3.265e-26
Identity = 67/164 (40.85%), Postives = 96/164 (58.54%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPV-------------QKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVR--MGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVA 628
            ++W P TKLGRLV+EGKI  +++I  +   I+E +I+D L+ + L+ E MK   +             QK+T  G +TR++   +VGD DGHVG+G+  S ++  A   AI  AKL++I V    G W    G PH++P  V GK GSV V +  AP+G GIVA
Sbjct:    5 EEWQPKTKLGRLVKEGKITNIDEILSNKYVIREPEIVDVLLPN-LEVEFMKWRIIRGKFRSKKPYRMAQKKTAEGNKTRYEVIAIVGDKDGHVGVGLGRSSDLLIAREKAINRAKLNIIKVARGCGSWECACGAPHSIPYQVEGKSGSVRVILKPAPKGVGIVA 167          

HSP 2 Score: 27.7202 bits (60), Expect = 3.265e-26
Identity = 15/29 (51.72%), Postives = 17/29 (58.62%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            KK+ + AGI DV   S G TKT  N V A
Sbjct:  172 KKIFRLAGIKDVWVRSFGKTKTKMNHVFA 200          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_NATPD (30S ribosomal protein S5P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rps5p PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.510e-25
Identity = 61/154 (39.61%), Postives = 94/154 (61.04%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVI--PVRMGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            W P T+LGR V +G+I  ++      LP+KE +++D L+   L+DEV+ I  VQ+ T +G+R +F+  VV+G+ DG+VG       +V  AI+ AI +AKL++I  P+  G W ++ G  +++    TGK GSV V +  APRG G+ AA   R
Sbjct:    5 WEPRTRLGRKVADGEITSMQDALQSGLPLKEPELVDQLLPG-LEDEVLDINMVQRMTDSGRRVKFRCVVVIGNRDGYVGYAQGRDDQVGGAIQKAIDVAKLNIIDVPLGSGSWEDRPGGRNSLMRRTTGKAGSVEVELKPAPRGLGLAAAPTVR 157          

HSP 2 Score: 28.4906 bits (62), Expect = 3.510e-25
Identity = 12/29 (41.38%), Postives = 18/29 (62.07%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            + VL+ AG++D  T   G+T+T  N  KA
Sbjct:  157 RHVLELAGVEDAWTKCHGNTRTTLNLAKA 185          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_HALWD (30S ribosomal protein S5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps5p PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.939e-25
Identity = 59/152 (38.82%), Postives = 93/152 (61.18%), Query Frame = 2
Query:  182 DKWVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPV--RMGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAA 631
            D W P T+LGR+V++G +  +EQ     LP+KE +++D L+   L DEV+ I  VQ+ T +G+R +F+  V +G+ +G +G       +V +AI+ AI +AKL++I V    G W +  G  +++  N  GK GSVTV +  AP+G G+ AA
Sbjct:    9 DGWTPRTRLGRMVQDGDVTSMEQALNSGLPLKEPELVDQLLPG-LDDEVLDINMVQRMTDSGRRVKFRCVVAIGNRNGFLGYAEGRDDQVGSAIQKAIDVAKLNLISVDRGSGSWEDSAGGVNSLTRNAEGKAGSVTVEVMPAPQGLGLAAA 159          

HSP 2 Score: 29.6462 bits (65), Expect = 5.939e-25
Identity = 12/27 (44.44%), Postives = 18/27 (66.67%), Query Frame = 1
Query:  646 VLQFAGIDDVITSSRGSTKTLGNFVKA 726
            +L+ AG++D  T S G+T+T  N  KA
Sbjct:  165 ILELAGVEDAWTRSNGNTRTTVNLAKA 191          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_CENSY (30S ribosomal protein S5P OS=Cenarchaeum symbiosum GN=rps5p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.020e-23
Identity = 62/149 (41.61%), Postives = 88/149 (59.06%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRILEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRM--GYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVA 628
            WVP T LG+ V  G+I  LE+I      I+E  II  L+   LK EV+ +  +QK T  GQ TRFKA V  G+ +G++G+G   +K++  AI  A   A L+V P+++  G W  +  + H+VP  V GK GSV + +  APRG G+VA
Sbjct:   27 WVPKTALGKRVNAGEITSLEEIQEAGARIQESGIIKKLLPD-LKTEVVDVGIIQKMTSNGQSTRFKAIVAAGNENGYLGIGQGKAKQMRIAIEKANNQALLNVGPIKLGCGSWECRCDQKHSVPFKVRGKGGSVVIEILPAPRGLGLVA 174          

HSP 2 Score: 28.4906 bits (62), Expect = 4.020e-23
Identity = 12/31 (38.71%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKAPL 732
            +++L+ AG+ D  T+++GST T  +  KA L
Sbjct:  179 RRLLELAGLKDAYTTAKGSTPTTNSTSKAVL 209          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_LACSS (30S ribosomal protein S5 OS=Lactobacillus sakei subsp. sakei (strain 23K) GN=rpsE PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 4.651e-12
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 2
Query:  314 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRMGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            L+D V+ I  V K  + G+R RF A V+VGD +GHVG G   ++EV  AIR A+  AK ++I V       K+G   T+P  V G+ G+  V +  A  G+GI A    R
Sbjct:   11 LEDRVVSINRVTKVVKGGRRLRFAAIVIVGDKNGHVGFGTGKAQEVPEAIRKAVEDAKKNLINV------PKVGT--TLPHEVIGRFGAGRVLLKPAVEGSGIAAGGAVR 112          

HSP 2 Score: 26.1794 bits (56), Expect = 4.651e-12
Identity = 13/31 (41.94%), Postives = 21/31 (67.74%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKAPL 732
            + V++ AGIDDV + + GS KT  N ++A +
Sbjct:  112 RAVMELAGIDDVTSKTLGS-KTAINVIRATI 141          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_BACSK (30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1)

HSP 1 Score: 63.5438 bits (153), Expect = 2.230e-11
Identity = 39/106 (36.79%), Postives = 61/106 (57.55%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRMGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVA 628
            +L+++V+ I  V K  + G+R RF A VVVGD +GHVG G+  ++EV  AIR A+  AK ++I V +           T+P  + G+ G+  V +  A  G G++A
Sbjct:   10 ELEEKVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGMGKAQEVPEAIRKAVEDAKKNLIEVPI--------VNTTIPHQIVGRFGAGRVFLKPASEGTGVIA 107          

HSP 2 Score: 26.5646 bits (57), Expect = 2.230e-11
Identity = 13/32 (40.62%), Postives = 22/32 (68.75%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKAPLS 735
            + VL+ AGI DV++ S GS+  + N V+A ++
Sbjct:  112 RAVLELAGIGDVLSKSLGSSNPI-NMVRATIT 142          
BLAST of EY649897 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 8.228e-11
Identity = 41/111 (36.94%), Postives = 59/111 (53.15%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRMGYWGNKIGRPHTVPCNVTGKCGSVTVRMGSAPRGAGIVAARVPR 643
            +++D V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  A+ S+I V +      +G   T+P    G  G   + M  A  G+G+ A    R
Sbjct:   11 EIEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVETARKSLIEVPI------VGT--TLPHEAVGVYGGGRILMKPALEGSGVAAGGAVR 113          

HSP 2 Score: 25.409 bits (54), Expect = 8.228e-11
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  640 KKVLQFAGIDDVITSSRGSTKTLGNFVKA 726
            + V++ AGIDDV TS R  + T  N V+A
Sbjct:  113 RAVMELAGIDDV-TSKRLGSNTAVNVVRA 140          
The following BLAST results are available for this feature:
BLAST of EY649897 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
RS5_META31.673e-2842.9530S ribosomal protein S5P OS=Methanococcus aeolicu... [more]
RS5_METB62.344e-2737.1830S ribosomal protein S5P OS=Methanoregula boonei ... [more]
RS5_METST1.481e-2641.5630S ribosomal protein S5P OS=Methanosphaera stadtm... [more]
RS5_NANEQ3.265e-2640.8530S ribosomal protein S5P OS=Nanoarchaeum equitans... [more]
RS5_NATPD3.510e-2539.6130S ribosomal protein S5P OS=Natronomonas pharaoni... [more]
RS5_HALWD5.939e-2538.8230S ribosomal protein S5P OS=Haloquadratum walsbyi... [more]
RS5_CENSY4.020e-2341.6130S ribosomal protein S5P OS=Cenarchaeum symbiosum... [more]
RS5_LACSS4.651e-1240.0030S ribosomal protein S5 OS=Lactobacillus sakei su... [more]
RS5_BACSK2.230e-1136.7930S ribosomal protein S5 OS=Bacillus clausii (stra... [more]
RS5_PEDPA8.228e-1136.9430S ribosomal protein S5 OS=Pediococcus pentosaceu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-G06-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649897 ID=EY649897; Name=EY649897; organism=Citrus sinensis; type=EST; length=940bp
CTCGCATTTTTCACTCTCCCAAATCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGATGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAATAAGATAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGATCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAATGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGGTTC
TGCCCCACGTGGTGCCGGAATTGTGGCGGCTAGGGTTCCAAGAAAGTGCT
GCAGTTTGCTGGTATTGACGATGTTATCACATCTTCTCGTGGGTCGACCA
AGACTCTTGGAAACTTTGTCAAGGCACCTTTGAGTGTTTGGTGAAGACAT
ATGCCTTTCTTACACCTGATTTCTGGAGGAGACTCGGTTTGTGAAATCTC
ATACCAGAGTACACAGAATCTGTGACGCCAAAGCCCATCACCAAGCAGTC
ATACAGGAGGGGGTCAAGGTGAACTTTAGCTCTTAGGCTGCTGGAAAGGG
AGACATAAAAGGAAGGGATTGGGTGACTCTTAGATAACTT
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