EY649894

Overview
NameEY649894
Unique NameEY649894
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: B3GL2_DANRE (UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransferase 2 OS=Danio rerio GN=b3galnt2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.306e-13
Identity = 49/163 (30.06%), Postives = 79/163 (48.47%), Query Frame = 2
Query:   14 KTIAICEFGVHNVTAAYIMKCDDDTFIRVDAVLKEIE-GIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQYGCMEGYYTAHYQSPMQMICLWDKLSR 499
            K +   ++ V N   + ++K DDD FI VDAVL +++       SL+ GN        R GKW     E+    YP +A G GYV+S D+ ++  L    Q L+ ++ EDVSMG+W+         +Y  S   C+  C     ++   S  ++  LW + ++
Sbjct:  328 KLLQFYKWSVENADFSLLLKTDDDCFIDVDAVLMKMQRRRLTHTSLWWGNFRQNWAVDRVGKWQEL--EYASPAYPAFACGSGYVVSRDLVQW--LASNAQHLKAYQGEDVSMGIWMAAVGPR---KYQDSGWLCEKECYVDMLSSPQHSAEELRLLWSRKNK 483          
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: B3GT6_MOUSE (Beta-1,3-galactosyltransferase 6 OS=Mus musculus GN=B3galt6 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.405e-12
Identity = 52/161 (32.30%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   14 KTIAICEFGVHNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP--KRSLYMGNLNLLHRPLRTGKWAVTYEEWPQ-EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKF-CQY---GCMEGYYTAHYQSPMQMI 475
            K +A+  +    V   +++K DDD+F R+DA+L ++    P  +R LY G  +   R    G+W      W   + Y PYA G GYV+S+D+  ++ L    + LR +  EDVS+G W+    + + V+  H  +F  +Y   GC   Y   H QSP  M+
Sbjct:  131 KVLAMLTWLDERVDFEFVLKADDDSFARLDAILVDLRAREPARRRRLYWGFFSGRGRVKPGGRWREA--AWQLCDYYLPYALGGGYVLSADLVHYLRL--SREYLRAWHSEDVSLGTWL----APVDVQREHDPRFDTEYKSRGCNNQYLVTHKQSPEDML 283          
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: B3GT6_HUMAN (Beta-1,3-galactosyltransferase 6 OS=Homo sapiens GN=B3GALT6 PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 4.088e-12
Identity = 59/198 (29.80%), Postives = 94/198 (47.47%), Query Frame = 2
Query:   14 KTIAICEFGVHNVTAAYIMKCDDDTFIRVDAVLKEIEGIFP--KRSLYMGNLNLLHRPLRTGKWAVTYEEWPQ-EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKF-CQY---GCMEGYYTAHYQSPMQMICLWDKLSRGRAHCCNFR*QAAFGANYXYNLSSYSPAC 586
            K +A+  +   +V   +++K DDD+F R+DA+L E+    P  +R LY G  +   R    G+W      W   + Y PYA G GYV+S+D+  ++ L      LR +  EDVS+G W+    + + V+  H  +F  +Y   GC   Y   H QS   M+     L+R    C   + +     +Y Y+ S+    C
Sbjct:  135 KVLAMLAWLDEHVAFEFVLKADDDSFARLDALLAELRAREPARRRRLYWGFFSGRGRVKPGGRWREA--AWQLCDYYLPYALGGGYVLSADLVHYLRL--SRDYLRAWHSEDVSLGAWL----APVDVQREHDPRFDTEYRSRGCSNQYLVTHKQSLEDMLEKHATLAREGRLC---KREVQLRLSYVYDWSAPPSQC 321          
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: B3GT5_HUMAN (Beta-1,3-galactosyltransferase 5 OS=Homo sapiens GN=B3GALT5 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.973e-12
Identity = 46/161 (28.57%), Postives = 74/161 (45.96%), Query Frame = 2
Query:   56 AAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKF-----CQYGCMEGYYTAHYQSPMQMICLWDKLSRGRAHCC 517
            AA++MK D D FI VD + + +         + G L L   P+R    KW V+  E+P + YPP+ +G GYV S D+A  +   + ++S+   K+EDV +G+ +E+ N  +   +S    F                 H+  P  ++  W  L   R   C
Sbjct:  149 AAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQV--YNVSKSVPYIKLEDVFVGLCLERLNIRLEELHSQPTFFPGGLRFSVCLFRRIVACHFIKPRTLLDYWQALENSRGEDC 307          
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: B3GT5_PANPA (Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan paniscus GN=B3GALT5 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.519e-11
Identity = 45/156 (28.85%), Postives = 75/156 (48.08%), Query Frame = 2
Query:   56 AAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRT--GKWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKF--------CQYGCMEGYYTAHYQSPMQMICLWDKL 493
            AA++MK D D FI VD + + +         + G L L   P+R    KW V+  E+P + YPP+ +G GYV S D+A  +   + ++S+   K+EDV +G+ +E+ N  +   +S    F        C++         H+  P  ++  W  L
Sbjct:  149 AAFVMKTDSDMFINVDYLTELLLKKNRTTRFFTGFLKLNEFPIRQPFSKWFVSKSEYPWDRYPPFCSGTGYVFSGDVASQV--YNVSESVPYIKLEDVFVGLCLERLNIRLEELHSQPTFFPGGLRFSVCRF---RRIVACHFIKPRTLLDYWQAL 299          
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: SQV2_CAEEL (Beta-1,3-galactosyltransferase sqv-2 OS=Caenorhabditis elegans GN=sqv-2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.903e-11
Identity = 53/196 (27.04%), Postives = 88/196 (44.90%), Query Frame = 2
Query:   14 KTIAICEFGVHNVTAAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTGKWAVTYEEWPQ-EVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKF----CQYGCMEGYYTAHYQSPMQMICLWDKLSRGRAHCCNFR*QAAFGANYXYNLSSYSPAC 586
            KT+A       N    + +K D D+F+R+  ++  ++ I     LY G L+   +P R GKW     EW   + Y PY  G GYV+S ++ +F+ +    Q  R ++ EDVS+G W+      + V+Y H  +F       GC   Y   H  +  +M  +++ L +    C     +     +Y Y+ S     C
Sbjct:  137 KTLACFVHAFANFKFKFFLKTDIDSFVRITPLIINLKQI-QDPMLYWGFLDGRAKPFRKGKWKEP--EWNLCDRYLPYQLGGGYVLSYELIRFLAI--NAQLFRHYRNEDVSVGAWI----GGLDVKYVHDPRFDTEWRSRGCNNEYLITHKHTEQEMQEMFENLKKTGKLCAK---EFQKHPSYVYDFSKAPSEC 320          
BLAST of EY649894 vs. ExPASy Swiss-Prot
Match: B3GN4_MOUSE (UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 4 OS=Mus musculus GN=B3gnt4 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.709e-11
Identity = 50/166 (30.12%), Postives = 78/166 (46.99%), Query Frame = 2
Query:   56 AAYIMKCDDDTFIRVDAVLKEIEGIFPKRSLYMGNLNLLHRPLRTG--KWAVTYEEWPQEVYPPYANGPGYVISSDIAKFIVLQHGNQSLRLFKMEDVSMGMWVEQFNSTMTVRYSHSWKFCQYG----------CM-EGYYTAHYQSPMQMICLWDKLSRGRAHC 514
            A +I+K DDD FI V  VL+ +EG  P +   +G++  L RP R    K+ + +  +    YPPYA G GYV+S    +   L    +   LF ++DV +GM + +   T      H   F  +G          C+ +G    H  SP++M  +W  ++  R  C
Sbjct:  185 AHFILKGDDDVFIHVPNVLEFLEGWDPAQDFLVGDVIRLARPNRNTKVKYFIPFSMYRARHYPPYAGGGGYVMSQATVRH--LHTAMEEAELFPIDDVFVGMCLRKLGVTPI----HHAGFKTFGIQQPLNPRDPCLYKGLLLVHRLSPLEMWTMWALVTDERLKC 344          
The following BLAST results are available for this feature:
BLAST of EY649894 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
B3GL2_DANRE6.306e-1330.06UDP-GalNAc:beta-1,3-N-acetylgalactosaminyltransfer... [more]
B3GT6_MOUSE1.405e-1232.30Beta-1,3-galactosyltransferase 6 OS=Mus musculus G... [more]
B3GT6_HUMAN4.088e-1229.80Beta-1,3-galactosyltransferase 6 OS=Homo sapiens G... [more]
B3GT5_HUMAN6.973e-1228.57Beta-1,3-galactosyltransferase 5 OS=Homo sapiens G... [more]
B3GT5_PANPA4.519e-1128.85Beta-1,3-galactosyltransferase 5 (Fragment) OS=Pan... [more]
SQV2_CAEEL5.903e-1127.04Beta-1,3-galactosyltransferase sqv-2 OS=Caenorhabd... [more]
B3GN4_MOUSE7.709e-1130.12UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltr... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-G03-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649894 ID=EY649894; Name=EY649894; organism=Citrus sinensis; type=EST; length=923bp
CGGACGCGTGGGGAAAACTATTGCGATTTGTGAGTTCGGGGTTCATAATG
TGACAGCTGCTTACATCATGAAATGTGATGATGACACATTTATTAGGGTG
GACGCTGTCCTGAAAGAAATTGAGGGCATCTTTCCAAAGAGGTCCCTTTA
TATGGGCAATCTCAATCTCTTACATCGTCCTCTCCGAACTGGGAAATGGG
CTGTCACTTATGAGGAGTGGCCACAAGAAGTATATCCTCCCTATGCTAAT
GGGCCTGGGTATGTAATTTCCAGTGATATCGCAAAATTCATTGTCTTGCA
ACATGGCAATCAGAGCCTAAGGCTCTTCAAGATGGAGGATGTGAGTATGG
GAATGTGGGTTGAACAATTTAACAGTACCATGACTGTACGGTACTCTCAC
AGCTGGAAGTTTTGTCAGTATGGATGCATGGAAGGTTACTACACTGCACA
TTACCAATCCCCGATGCAGATGATCTGCCTTTGGGACAAGTTGTCAAGAG
GTCGGGCTCATTGCTGCAACTTTAGATGACAAGCAGCTTTTGGTGCCAAT
TATTGNTATAACCTTTCTTCCTATAGCCCTGCCTGTTTTTGTGAGAATTT
TTTTGTCCANTGAAGTGGGGGTANGAGACCGCTGTGCCTATAATTTGGAA
ATACAGATTGGTCCATCGTTCATTGGATTCTTGACACCAGATAATTAGGG
CATCCTACTTTGGACCAATAGAACAGAAAGTATGGGTGGTGGTTGTTATC
CCGATGAACCTGAAATCGATGGAAGTGGTGAAGCTAGGAAAGGGCTCCCC
CTTTTCCTTGGGAAACTGCATTCGAGAGAAAACTACCTTGGATCAAGGAA
AATTTCTCCTCAAAAAAAAAAAAAAGGGGGCCCCTTTAGAGATCAATCTT
ACTACCCGGTGCTGGAGTATAAC
back to top