EY649858

Overview
NameEY649858
Unique NameEY649858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_DROME (40S ribosomal protein S2 OS=Drosophila melanogaster GN=sop PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 6.045e-80
Identity = 144/193 (74.61%), Postives = 167/193 (86.53%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLSVCXRHMASL 763
            +WVPVTKLGRLVREGKI+SLE+IYL+SLPIKE++IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GH+GLGVKCSKEVATAIRGAIILAKLSV+PVRRGYWGNKIG+PHTVPC VTGKCGSV+VR++PAPRG GIV+A V KK+L  A I+D +TS+RGST TLGN  K   +   +  A L
Sbjct:   42 EWVPVTKLGRLVREGKIKSLEEIYLYSLPIKEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVSAPVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYL 234          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_CRIGR (40S ribosomal protein S2 (Fragment) OS=Cricetulus griseus GN=RPS2 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 4.956e-78
Identity = 136/178 (76.40%), Postives = 156/178 (87.64%), Query Frame = 2
Query:  191 VPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +PVTKLGRLV++ KI+SLE+IYL SLPIKE +IID  +G  LKDEV+KIMPVQKQTRAGQRTRFKAFV +GD +GHVGLGVKCSKEVATAIRGAIILAKLS++PVRRGYWGNKIG+PHTVPC VTG+CGSV VR++PAPRG GIV+A V KK+L  A IDD +TS+RG T TLGN  K
Sbjct:    1 IPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAK 178          

HSP 2 Score: 32.7278 bits (73), Expect = 4.956e-78
Identity = 13/24 (54.17%), Postives = 16/24 (66.67%), Query Frame = 1
Query:  721 QATFECXLXTYGFLTPDSWXETSF 792
            +ATF+    TY +LTPD W ET F
Sbjct:  178 KATFDAISKTYSYLTPDLWKETVF 201          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_DICDI (40S ribosomal protein S2 OS=Dictyostelium discoideum GN=rps2 PE=1 SV=1)

HSP 1 Score: 277.715 bits (709), Expect = 4.139e-77
Identity = 137/178 (76.97%), Postives = 154/178 (86.52%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLV 721
            W PVTKLGRLV  G + ++ +IYL SLPIKEYQIID  +   LKDEVMKI+PVQKQTRAGQRTRFKAFVVVGD +GHVGLGVKC+KEVATAI GAI+ AKLSVIPVRRGYWGNK+G PHTVP  VTGKCGSV VR+VPAPRG GIVAARV KK+LQ+A +DDV+TSSRG T+T+GN V
Sbjct:   49 WTPVTKLGRLVALGLVENIHEIYLFSLPIKEYQIIDKFLN--LKDEVMKIVPVQKQTRAGQRTRFKAFVVVGDHNGHVGLGVKCAKEVATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVAARVPKKLLQYAGVDDVYTSSRGKTRTMGNFV 224          

HSP 2 Score: 32.7278 bits (73), Expect = 4.139e-77
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  724 ATFECXLXTYGFLTPDSWXETSFVKFPNQD 813
            ATF     T+ +LTPD W E   +K P Q+
Sbjct:  226 ATFFAITKTFAYLTPDLWREVKLIKTPYQE 255          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_SCHPO (40S ribosomal protein S2 OS=Schizosaccharomyces pombe GN=rps2 PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 5.401e-77
Identity = 134/180 (74.44%), Postives = 161/180 (89.44%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +WVPVTKLGRLV+ GKI+S+E+IYL+SLPIKEYQI+D  +  +L DEVMK++PVQKQTRAGQRTRFKAFVV+GD+DGHVGLG+KC+KEVATAIRGAII+ KLS++P+RRGYWG  +G PHTVP  V+GKCGSVTVR+VPAPRGAG+VAA V+K+ LQ A I+D +T SRGSTKTLGN VK
Sbjct:   33 EWVPVTKLGRLVKAGKIKSIEEIYLYSLPIKEYQIVDYFLP-RLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVATAIRGAIIMGKLSIMPIRRGYWGTALGDPHTVPVKVSGKCGSVTVRLVPAPRGAGLVAAPVTKRFLQLAGIEDCYTQSRGSTKTLGNFVK 211          

HSP 2 Score: 28.4906 bits (62), Expect = 5.401e-77
Identity = 12/31 (38.71%), Postives = 17/31 (54.84%), Query Frame = 1
Query:  721 QATFECXLXTYGFLTPDSWXETSFVKFPNQD 813
            +A F     TYG LTP+ W E  F + P ++
Sbjct:  211 KAAFAAASLTYGILTPNLWAERPFGQTPIEE 241          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_CAEEL (40S ribosomal protein S2 OS=Caenorhabditis elegans GN=rps-2 PE=1 SV=1)

HSP 1 Score: 268.47 bits (685), Expect = 7.027e-74
Identity = 132/188 (70.21%), Postives = 155/188 (82.45%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLSVCXR 748
            +W PVTKLGRLV+E KI +LE+IYL+SLPIKE++IID L  + LKDEV+KI PVQKQT AGQRTRFKAFV +GD  GHVGLGVKCSKEVATAIRGAI+ AKL+V+PVRRGYWGNKIG PHTVPC VTGKC SV VR++PAPRG GIV+A V KK+L  A I+D +T+++GST TLGN  K   +   R
Sbjct:   56 EWTPVTKLGRLVKEKKITTLEEIYLNSLPIKEFEIIDALCSN-LKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVSAPVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQR 242          

HSP 2 Score: 31.187 bits (69), Expect = 7.027e-74
Identity = 13/30 (43.33%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  721 QATFECXLXTYGFLTPDSWXETSFVKFPNQ 810
            +AT+     TY +LTPD W E +  K P Q
Sbjct:  234 KATYAALQRTYSYLTPDLWKEEALEKSPYQ 263          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_LEIAM (40S ribosomal protein S2 OS=Leishmania amazonensis PE=3 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 9.140e-71
Identity = 123/180 (68.33%), Postives = 150/180 (83.33%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGH-KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLV 721
            +WVP TKLGRLV+  K+ SLE+I+L S+PIKE+QI+DTLI   KL DE+MKI PVQK T AGQRTRFKAF VVGD DGH+G+G +  KEV+ AIR ++I AKL+++PVRRGYWGNKIG PHT+P  VTGKCGSV VR+VPAPRG GIVAA V KK+L+FA ++DV+TSSRG T+T GNL+
Sbjct:   44 EWVPCTKLGRLVKAQKVTSLEEIFLFSMPIKEHQIVDTLIAEGKLHDEMMKIYPVQKATSAGQRTRFKAFNVVGDCDGHIGIGARVGKEVSLAIRASMIAAKLNIVPVRRGYWGNKIGEPHTIPMKVTGKCGSVAVRLVPAPRGTGIVAAPVPKKILEFAGVEDVYTSSRGKTRTHGNLI 223          

HSP 2 Score: 32.3426 bits (72), Expect = 9.140e-71
Identity = 14/30 (46.67%), Postives = 17/30 (56.67%), Query Frame = 1
Query:  724 ATFECXLXTYGFLTPDSWXETSFVKFPNQD 813
            ATF     TYGFLTPD W +T   + P  +
Sbjct:  225 ATFYALRKTYGFLTPDLWADTEPSRDPTDE 254          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS2_YEAST (40S ribosomal protein S2 OS=Saccharomyces cerevisiae GN=RPS2 PE=1 SV=3)

HSP 1 Score: 252.677 bits (644), Expect = 9.103e-68
Identity = 122/179 (68.16%), Postives = 151/179 (84.36%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            WVPVTKLGRLV+ GKI ++E+I+LHSLP+KE+QIIDTL+   L+DEVM I PVQKQTRAGQRTRFKA VVVGD++GHVGLG+K +KEVA AIR  II+AKLSVIP+RRGYWG  +G+PH++    TGKCGSVTVR++PAPRG+GIVA+   KK+LQ A ++DV+T S G T+TL N +K
Sbjct:   35 WVPVTKLGRLVKAGKITTIEEIFLHSLPVKEFQIIDTLLPG-LQDEVMNIKPVQKQTRAGQRTRFKAVVVVGDSNGHVGLGIKTAKEVAGAIRAGIIIAKLSVIPIRRGYWGTNLGQPHSLATKTTGKCGSVTVRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLK 212          

HSP 2 Score: 26.5646 bits (57), Expect = 9.103e-68
Identity = 11/21 (52.38%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  721 QATFECXLXTYGFLTPDSWXE 783
            +A F     TYGFLTP+ W E
Sbjct:  212 KAAFVAIGNTYGFLTPNLWAE 232          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_HYPBU (30S ribosomal protein S5P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps5p PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 2.501e-39
Identity = 88/182 (48.35%), Postives = 122/182 (67.03%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +W P T +GRLV+EG+IRSL +I+  +LPI E +I+D LIG +LK E + +  VQK T AG+  RF+  VV+G+ +G VG+G   ++++A AI  AI  AKL++IPVRR  G W      PH+VP  V GK GSV V + PAPRG G+VA   +K VL+ A I DV++ ++G T+T  N VK
Sbjct:   11 EWQPRTYVGRLVKEGRIRSLSEIFEKNLPILEPEIVDYLIGPELKSETVDVRLVQKMTDAGRINRFRVVVVIGNENGFVGVGQGKARQLAVAIEKAIRNAKLNIIPVRRGCGSWECLCSEPHSVPFTVRGKSGSVEVILKPAPRGTGLVAGDAAKVVLRLAGIRDVWSFTKGDTRTTINFVK 192          

HSP 2 Score: 23.483 bits (49), Expect = 2.501e-39
Identity = 9/22 (40.91%), Postives = 12/22 (54.55%), Query Frame = 1
Query:  721 QATFECXLXTYGFLTPDSWXET 786
            +AT+     TY F+TP  W  T
Sbjct:  192 KATYNALKQTYKFVTPLDWART 213          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_THEPD (30S ribosomal protein S5P OS=Thermofilum pendens (strain Hrk 5) GN=rps5p PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 3.964e-39
Identity = 82/182 (45.05%), Postives = 127/182 (69.78%), Query Frame = 2
Query:  185 KWVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGY--WGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +W P T LGRLV EGKI+S+++++  ++PI+E +IIDTL+   LK EV+ +  VQ+QT +G+ ++++  V VG+ DG+VG+G+  S+++  AI  A   AKL+++PVRRG   W    G PH++P  V GK GSV + ++PAP+G G+VA+ V+K VL+ A I DV++ S G T+T  N+ K
Sbjct:    4 EWQPRTLLGRLVVEGKIKSIDEVFARNMPIREVEIIDTLLPG-LKSEVLSVGFVQRQTDSGEVSQYQVTVAVGNEDGYVGVGMGKSRQIGIAIEKATRRAKLNIVPVRRGCGSWECLCGEPHSIPFKVEGKAGSVKIELIPAPKGVGLVASDVAKTVLRLAGIKDVWSRSYGETRTTHNMAK 184          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_PYRIL (30S ribosomal protein S5P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps5p PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.177e-39
Identity = 86/178 (48.31%), Postives = 124/178 (69.66%), Query Frame = 2
Query:  188 WVPVTKLGRLVREGKIRSLEQIYLHSLPIKEYQIIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRR--GYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGN 715
            W P T+LGRLV+EGKIR++++I+ ++  IKE +I+D L+   LK E++ I  VQ+QT AG+R++F+  V VG+ DG+VG+G+  +K+V  AI  A+  AKL++ PVRR  G W      PH+VP  V GK GSV V ++PAP+G G+VA  V+K VL+ A I DV+T +RG T+T  N
Sbjct:    9 WEPRTELGRLVKEGKIRTIDEIFANNYIIKEPEIVDILLPG-LKQEILNINVVQRQTHAGERSQFQVVVAVGNEDGYVGVGIGKAKQVRQAIEKAVREAKLNLTPVRRGCGSWKCSCDEPHSVPFVVRGKSGSVEVTLIPAPKGVGLVAGDVAKVVLRLAGIKDVWTQTRGDTRTTLN 185          
The following BLAST results are available for this feature:
BLAST of EY649858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
RS2_DROME6.045e-8074.6140S ribosomal protein S2 OS=Drosophila melanogaste... [more]
RS2_CRIGR4.956e-7876.4040S ribosomal protein S2 (Fragment) OS=Cricetulus ... [more]
RS2_DICDI4.139e-7776.9740S ribosomal protein S2 OS=Dictyostelium discoide... [more]
RS2_SCHPO5.401e-7774.4440S ribosomal protein S2 OS=Schizosaccharomyces po... [more]
RS2_CAEEL7.027e-7470.2140S ribosomal protein S2 OS=Caenorhabditis elegans... [more]
RS2_LEIAM9.140e-7168.3340S ribosomal protein S2 OS=Leishmania amazonensis... [more]
RS2_YEAST9.103e-6868.1640S ribosomal protein S2 OS=Saccharomyces cerevisi... [more]
RS5_HYPBU2.501e-3948.3530S ribosomal protein S5P OS=Hyperthermus butylicu... [more]
RS5_THEPD3.964e-3945.0530S ribosomal protein S5P OS=Thermofilum pendens (... [more]
RS5_PYRIL5.177e-3948.3130S ribosomal protein S5P OS=Pyrobaculum islandicu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-C12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649858 ID=EY649858; Name=EY649858; organism=Citrus sinensis; type=EST; length=930bp
CTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCC
GGCCCCACGTGGTGCCGGAATTGTTGCGGCTAGGGTTTCAAAGAAAGTGC
TGCAATTTGCTTGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACC
AAGACTCTTGGGAACTTGGTCAAGCAACCTTTGAGTGTNTGTTGNAGACA
TATGGCTTCCTTACACCTGATTCCTGGNAGGAGACTTCGTTTGTGAAATT
CCCTAACCAAGATACCCAGTTCTTTTGACGCCAAAGCCATCTACAGGGCA
TTATCACAGAATTGATCAGGTGAACCCTTAGCTCCTTAGGCTTGCTGGAG
AGAAAGCTTACAATGAAAGGCGTTTCGGTG
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