EY649858

Overview
NameEY649858
Unique NameEY649858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_DEHE1 (30S ribosomal protein S5 OS=Dehalococcoides ethenogenes (strain 195) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 52/160 (32.50%), Postives = 78/160 (48.75%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTK-------TLGNL--VKQPLSVCXRHMASL 763
            +L D+++ I  V K  + G+R  F A VV GD   HVG+GV  +KEV +AI  A   AK ++  +        +    TVP  +  K G+  V + PA  G GI+A    + VL+   I D+ T S G +        TLG L  ++ P +   +  +SL
Sbjct:   14 ELNDKLIFINRVTKVVKGGKRMGFAALVVTGDGKNHVGIGVGKAKEVPSAISKASANAKRNLSRI--------LLNGTTVPHEIVFKYGAAQVLLKPAAPGTGIIAGGSVRAVLESTGIKDILTKSMGCSNKANVAKATLGGLTAMRDPKTTVTKRRSSL 165          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_ACAM1 (30S ribosomal protein S5 OS=Acaryochloris marina (strain MBIC 11017) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.965e-11
Identity = 40/133 (30.08%), Postives = 69/133 (51.88%), Query Frame = 2
Query:  317 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGN 715
            ++ V++I  V K  + G++  F+A VVVG+  G VG+GV  + +V  A+R  +   K  ++ V        + R +++P  + G+ G+  V M PA  G G++A    + VL+ A + +V     GS   L N
Sbjct:   20 QERVVQIRRVSKVVKGGKKLSFRAIVVVGNERGQVGVGVGKASDVIGAVRKGVADGKKQLVEV-------PLTRSNSIPHPMIGRGGAAKVMMRPAAPGTGVIAGGAVRTVLELAGVRNVLAKQLGSDNPLNN 145          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_THETN (30S ribosomal protein S5 OS=Thermoanaerobacter tengcongensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 50/130 (38.46%), Postives = 70/130 (53.85%), Query Frame = 2
Query:  314 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTD-GHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGST 700
            LK+ V+ I  V K  + G+  RF   VVVGD D G+VG+G   + E+  AIR AI  AK  +I V        +G   T+P  V G+ G+  V + PA  G G++A    + VL+ A I DV + S GS+
Sbjct:   11 LKERVVSINRVSKVVKGGKNFRFSVTVVVGDPDKGYVGVGRGKAAEIPDAIRKAIEDAKKHLIKVP------VVGT--TIPHEVIGEFGAGKVLLKPAREGTGVIAGGPVRAVLESAGIRDVLSKSLGSS 132          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_SYNR3 (30S ribosomal protein S5 OS=Synechococcus sp. (strain RCC307) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 41/133 (30.83%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  317 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGN 715
            ++ V++I  V K  + G++  F+A VVVG+  G VG+GV  + +V  A++  +   K  ++ V        + R +++P   TG+ G+ +V M PA  G G++A    + VL+ A I +V     GS   L N
Sbjct:   63 QERVIQIRRVSKTVKGGKKMSFRAIVVVGNEKGQVGVGVGKAGDVIGAVKKGVADGKKHLVKV-------PLTRSNSIPTISTGRDGAASVLMRPAAPGTGVIAGGSIRTVLELAGIKNVLAKRLGSKTPLNN 188          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_SYMTH (30S ribosomal protein S5 OS=Symbiobacterium thermophilum GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 42/137 (30.66%), Postives = 69/137 (50.36%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLV 721
            +LK++++ +  V K  + G+R  F A VVVGD +G VG G+  + E+  A+R     AK  +I +             T+P  V G+ G+  V + PA  G G++A    + VL+ A + D+ T S GS      ++
Sbjct:   10 ELKEKMVDLRRVAKTVKGGRRMSFSAVVVVGDGNGRVGAGLGKAAEIPEAVRKGTEDAKKHMIKIPL--------NGTTIPHEVIGRFGAGKVLLKPASPGTGVIAGGAVRAVLEAAGVRDILTKSLGSNNAANQVL 138          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_BORBU (30S ribosomal protein S5 OS=Borrelia burgdorferi GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 43/148 (29.05%), Postives = 77/148 (52.03%), Query Frame = 2
Query:  287 IIDTLIGHKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAK--LSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            ++D     K  ++++ +  V K  + G+R  F AF+VVGD +GHVG G   + + + AI+ ++  A+  L  +P+R+G          T+P  V G      V + PA  G G++A    + V++   + D+ + S GS  ++ N+VK
Sbjct:    1 MVDVHAQRKQIEKLISLNRVTKVVKGGRRFSFAAFMVVGDGEGHVGWGFGKANDASDAIKKSLTSARKNLRFVPIRKG----------TLPHEVIGCFKKAKVLIKPATHGTGVIAGGPVRAVMEALGVHDILSKSLGSNNSM-NVVK 137          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_ANADF (30S ribosomal protein S5 OS=Anaeromyxobacter sp. (strain Fw109-5) GN=rpsE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.790e-11
Identity = 47/129 (36.43%), Postives = 70/129 (54.26%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGS 697
            +L+D+V+ I  V K  + G+R  F A VVVGD +G+VG+G+  + EV  AIR     AK ++  V        +G   T+P  V G  G+  V + PA  G G++A    + VL+ A I +V T  +GS
Sbjct:   11 ELQDKVVHINRVAKVVKGGRRFSFSALVVVGDGNGYVGVGLGKANEVPEAIRKGGDQAKKNLFKV------PLVGT--TIPHEVLGHFGAGWVLLKPAGEGTGVIAGGTVRAVLEAAGIRNVLTKCQGS 131          
The following BLAST results are available for this feature:
BLAST of EY649858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
RS5_DEHE15.965e-1132.5030S ribosomal protein S5 OS=Dehalococcoides etheno... [more]
RS5_ACAM15.965e-1130.0830S ribosomal protein S5 OS=Acaryochloris marina (... [more]
RS5_THETN7.790e-1138.4630S ribosomal protein S5 OS=Thermoanaerobacter ten... [more]
RS5_SYNR37.790e-1130.8330S ribosomal protein S5 OS=Synechococcus sp. (str... [more]
RS5_SYMTH7.790e-1130.6630S ribosomal protein S5 OS=Symbiobacterium thermo... [more]
RS5_BORBU7.790e-1129.0530S ribosomal protein S5 OS=Borrelia burgdorferi G... [more]
RS5_ANADF7.790e-1136.4330S ribosomal protein S5 OS=Anaeromyxobacter sp. (... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-C12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649858 ID=EY649858; Name=EY649858; organism=Citrus sinensis; type=EST; length=930bp
CTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCC
GGCCCCACGTGGTGCCGGAATTGTTGCGGCTAGGGTTTCAAAGAAAGTGC
TGCAATTTGCTTGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACC
AAGACTCTTGGGAACTTGGTCAAGCAACCTTTGAGTGTNTGTTGNAGACA
TATGGCTTCCTTACACCTGATTCCTGGNAGGAGACTTCGTTTGTGAAATT
CCCTAACCAAGATACCCAGTTCTTTTGACGCCAAAGCCATCTACAGGGCA
TTATCACAGAATTGATCAGGTGAACCCTTAGCTCCTTAGGCTTGCTGGAG
AGAAAGCTTACAATGAAAGGCGTTTCGGTG
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