EY649858

Overview
NameEY649858
Unique NameEY649858
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_CLOP1 (30S ribosomal protein S5 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.517e-14
Identity = 53/141 (37.59%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  314 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLS 736
            LK++V+ I  V K  + G+  RF A VVVGD +GHVG+G   S E+  AIR  I  AK +++ V      + +G   TVP  + GK G+  V ++PA  G G++A   ++ VL+ A + DV   S GS     N+VK  ++
Sbjct:   10 LKEKVVSISRVTKVVKGGRNFRFSALVVVGDENGHVGVGTGKSIEIPEAIRKGIEDAKKNLVEV------SIVGT--TVPHEIHGKFGTGDVLIMPATEGTGVIAGGPARSVLELAGLKDVRAKSLGSNNP-RNMVKATIN 141          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_UREU1 (30S ribosomal protein S5 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 47/140 (33.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  317 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLS 736
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++  +V G+ G+  V ++PAP G GI+A    + V++ A   D++T SRG+   + N+++  ++
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATIN 181          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_UREPA (30S ribosomal protein S5 OS=Ureaplasma parvum GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 47/140 (33.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  317 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLS 736
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++  +V G+ G+  V ++PAP G GI+A    + V++ A   D++T SRG+   + N+++  ++
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATIN 181          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_UREP2 (30S ribosomal protein S5 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsE PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.981e-14
Identity = 47/140 (33.57%), Postives = 81/140 (57.86%), Query Frame = 2
Query:  317 KDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLS 736
            ++ V+KI  + K T+ G+  RF A VV+GD +G VG G+  S EV  AI+ AI  A  ++I V++   G       ++  +V G+ G+  V ++PAP G GI+A    + V++ A   D++T SRG+   + N+++  ++
Sbjct:   50 EERVVKIKRISKTTKGGRMMRFSALVVIGDKNGTVGFGMGKSIEVPDAIKKAIKNANNNLIKVKQTKKG-------SIYHDVNGRHGAAKVMLLPAPEGTGIIAGGPVRAVVELAGFTDIYTKSRGANAPM-NVIRATIN 181          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_FUSNN (30S ribosomal protein S5 OS=Fusobacterium nucleatum subsp. nucleatum GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.587e-14
Identity = 40/130 (30.77%), Postives = 72/130 (55.38%), Query Frame = 2
Query:  308 HKLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGS 697
            ++ +++++KI  V K T+ G+   F     VGD +G +GLG+  +  V  AIR AI  AK +++ +          + +T+P  + GK G+ T+ M PA  G G++A   S+++L+   + D+ T  +GS
Sbjct:    7 NQYQEKLLKISRVSKTTKGGRTISFSVLAAVGDGEGKIGLGLGKANGVPDAIRKAIAAAKKNIVKISL--------KNNTIPHEIAGKWGATTLWMAPAYEGTGVIAGSASREILELVGVHDILTKIKGS 128          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_BACSK (30S ribosomal protein S5 OS=Bacillus clausii (strain KSM-K16) GN=rpsE PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.379e-14
Identity = 51/142 (35.92%), Postives = 81/142 (57.04%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLS 736
            +L+++V+ I  V K  + G+R RF A VVVGD +GHVG G+  ++EV  AIR A+  AK ++I V             T+P  + G+ G+  V + PA  G G++A    + VL+ A I DV + S GS+  + N+V+  ++
Sbjct:   10 ELEEKVVTINRVAKVVKGGRRFRFAALVVVGDKNGHVGFGMGKAQEVPEAIRKAVEDAKKNLIEVPI--------VNTTIPHQIVGRFGAGRVFLKPASEGTGVIAGGPVRAVLELAGIGDVLSKSLGSSNPI-NMVRATIT 142          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_PEDPA (30S ribosomal protein S5 OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 53/138 (38.41%), Postives = 76/138 (55.07%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +++D V+ I  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR A+  A+ S+I V        +G   T+P    G  G   + M PA  G+G+ A    + V++ A IDDV TS R  + T  N+V+
Sbjct:   11 EIEDRVVAINRVTKVVKGGRRLRFAALVVVGDKNGHVGFGTGKAQEVPEAIRKAVETARKSLIEV------PIVGT--TLPHEAVGVYGGGRILMKPALEGSGVAAGGAVRAVMELAGIDDV-TSKRLGSNTAVNVVR 139          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_OCEIH (30S ribosomal protein S5 OS=Oceanobacillus iheyensis GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 49/141 (34.75%), Postives = 79/141 (56.03%), Query Frame = 2
Query:  314 LKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVKQPLS 736
            L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AI+ A+  AK ++I V        +G   T+P  + G+ GS  V M PA  G G+++    + +L+ A + D+ T S GS   + N+++  L+
Sbjct:   12 LEERVVTVNRVAKVVKGGRRFRFAALVVVGDKNGHVGFGTGKAQEVPEAIKKAVDDAKKNLISV------PIVGT--TIPHEIHGQFGSGNVLMKPAAEGTGVISGGPVRAILELAGVGDILTKSLGSNTPI-NMIRATLN 143          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_GEOSW (30S ribosomal protein S5 OS=Geobacillus sp. (strain WCH70) GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  V G  G+  + + PA  G G++A   ++ VL+ A I D+ + S GS   + N+V+
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPDAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGKIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVR 138          
BLAST of EY649858 vs. ExPASy Swiss-Prot
Match: RS5_GEOKA (30S ribosomal protein S5 OS=Geobacillus kaustophilus GN=rpsE PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.413e-14
Identity = 51/138 (36.96%), Postives = 78/138 (56.52%), Query Frame = 2
Query:  311 KLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDTDGHVGLGVKCSKEVATAIRGAIILAKLSVIPVRRGYWGNKIGRPHTVPCNVTGKCGSVTVRMVPAPRGAGIVAARVSKKVLQFACIDDVFTSSRGSTKTLGNLVK 724
            +L++ V+ +  V K  + G+R RF A VVVGD +GHVG G   ++EV  AIR AI  AK ++I V        +G   T+P  V G  G+  + + PA  G G++A   ++ VL+ A I D+ + S GS   + N+V+
Sbjct:   10 ELEERVVAVNRVAKVVKGGRRLRFSALVVVGDKNGHVGFGTGKAQEVPEAIRKAIEDAKKNLIEV------PIVGT--TIPHEVIGHFGAGEIILKPASEGTGVIAGGPARAVLELAGISDILSKSIGSNTPI-NMVR 138          
The following BLAST results are available for this feature:
BLAST of EY649858 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
RS5_CLOP11.517e-1437.5930S ribosomal protein S5 OS=Clostridium perfringen... [more]
RS5_UREU11.981e-1433.5730S ribosomal protein S5 OS=Ureaplasma urealyticum... [more]
RS5_UREPA1.981e-1433.5730S ribosomal protein S5 OS=Ureaplasma parvum GN=r... [more]
RS5_UREP21.981e-1433.5730S ribosomal protein S5 OS=Ureaplasma parvum sero... [more]
RS5_FUSNN2.587e-1430.7730S ribosomal protein S5 OS=Fusobacterium nucleatu... [more]
RS5_BACSK3.379e-1435.9230S ribosomal protein S5 OS=Bacillus clausii (stra... [more]
RS5_PEDPA4.413e-1438.4130S ribosomal protein S5 OS=Pediococcus pentosaceu... [more]
RS5_OCEIH4.413e-1434.7530S ribosomal protein S5 OS=Oceanobacillus iheyens... [more]
RS5_GEOSW4.413e-1436.9630S ribosomal protein S5 OS=Geobacillus sp. (strai... [more]
RS5_GEOKA4.413e-1436.9630S ribosomal protein S5 OS=Geobacillus kaustophil... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-004-C12-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649858 ID=EY649858; Name=EY649858; organism=Citrus sinensis; type=EST; length=930bp
CTCGCATTTTTCACTCTCCCAAAGCCCAAACCCTAGCTTCAAACCCTAAA
CACACAAGAACAAAACCATGGCTGAACGAGGTGGCGAGCGCGGTGCATTC
GGACGCGGCTTCGGCCGTGGTGGACGGGGCGACCGTGGAGGCCCACGTGG
CCGTCGCCGCGCTGGACGCAGAGAGGAAGAAGAGAAGTGGGTCCCAGTCA
CGAAACTCGGCCGTCTGGTGAGAGAAGGCAAGATCAGGAGCCTCGAGCAA
ATCTACCTCCACTCGCTCCCAATCAAGGAGTATCAAATCATCGACACGCT
TATCGGCCACAAATTGAAGGACGAGGTCATGAAGATCATGCCGGTGCAGA
AACAGACACGTGCCGGTCAGAGGACGAGGTTCAAGGCCTTCGTCGTCGTC
GGTGACACGGACGGCCACGTGGGTCTTGGCGTTAAGTGCTCCAAAGAGGT
TGCCACTGCCATCCGTGGCGCTATCATATTGGCGAAGCTGTCGGTGATTC
CGGTGAGAAGGGGTTACTGGGGTAACAAGATCGGGAGGCCACACACCGTG
CCGTGTAATGTGACCGGTAAGTGTGGCAGTGTCACCGTGAGGATGGTTCC
GGCCCCACGTGGTGCCGGAATTGTTGCGGCTAGGGTTTCAAAGAAAGTGC
TGCAATTTGCTTGTATTGACGATGTTTTCACATCTTCTCGTGGGTCGACC
AAGACTCTTGGGAACTTGGTCAAGCAACCTTTGAGTGTNTGTTGNAGACA
TATGGCTTCCTTACACCTGATTCCTGGNAGGAGACTTCGTTTGTGAAATT
CCCTAACCAAGATACCCAGTTCTTTTGACGCCAAAGCCATCTACAGGGCA
TTATCACAGAATTGATCAGGTGAACCCTTAGCTCCTTAGGCTTGCTGGAG
AGAAAGCTTACAATGAAAGGCGTTTCGGTG
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