EY649646

Overview
NameEY649646
Unique NameEY649646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.095e-24
Identity = 63/163 (38.65%), Postives = 96/163 (58.90%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRN---WPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            +GRG++++KRIEN  NRQVTF KRR G LKKA+E+SVLCDAEVA++IFS +G+L+EY+ +S    I    ERY  A    + P   ++ N   +  E + L+ +I  +Q +                  RH +GE L SL+ K+++ LE +L+  ++    +K
Sbjct:   16 LGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTI----ERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSN-----------------RHIVGESLGSLNFKELKNLEGRLEKGISRVRSKK 157          

HSP 2 Score: 26.5646 bits (57), Expect = 2.095e-24
Identity = 12/36 (33.33%), Postives = 21/36 (58.33%), Query Frame = 1
Query:  646 IRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKE 753
            +RS+KN+L+   I  +QK+E  ++     L  +I E
Sbjct:  153 VRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAE 188          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.552e-24
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG++++KRIEN  NRQVTF KRR G LKKA+E+SVLCDAEVA+I+FS +G+L+EY+ +S ++  +ERY++              + +++  E + L+ +I  LQ                    R  +G+ + ++SL+D++Q+E +L+  +
Sbjct:    1 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNS-VKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANS----------------RTIVGDSINTMSLRDLKQVENRLEKGI 136          

HSP 2 Score: 28.4906 bits (62), Expect = 3.552e-24
Identity = 12/39 (30.77%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  646 IRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            IR+RKN+L+   +  +QK+E  ++     L  ++ E E+
Sbjct:  139 IRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENER 177          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: FBP24_PETHY (MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.355e-24
Identity = 72/168 (42.86%), Postives = 100/168 (59.52%), Query Frame = 2
Query:  176 ITMGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEKINSCQ 676
            I MGRG++++KRIENK +RQVTFSKRRAG LKK HE+SVLCDA++ +IIFS KGKLFEY S    M +I+ RY +   A             + P+E N ++   D + K +R +         Q+ L R Y G+DL     +++ +LE+QL+ ALN     K+   Q
Sbjct:    2 IIMGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQPHSMSQIISRYLQTTGA-------------SLPVEDNRVQL-YDEVAKMRRDT------LNLQLSLQR-YKGDDLSLAQYEELNELEKQLEHALNKIRARKLELMQ 148          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD25_ORYSJ (MADS-box transcription factor 25 OS=Oryza sativa subsp. japonica GN=MADS25 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.429e-24
Identity = 58/160 (36.25%), Postives = 99/160 (61.88%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGRG++ +KRI+N +NRQVTFSKRR G +KKA E+++LCDA+V +I+FS  G+L+++S+ S M+ I+ERY+       +L+ P  E+ + W  E   L+ ++  L  N                  R  LGE++ + +++D+Q L+ Q++ +L++   +K
Sbjct:    1 MGRGKIAIKRIDNTMNRQVTFSKRRGGLMKKARELAILCDADVGLIVFSCTGRLYDFSSSS-MKSIIERYQEAGEEHCRLLNPMSEA-KFWQREVTTLRQQVQNLHHNN-----------------RQLLGEEISNFTVRDLQLLQNQVEMSLHSIRNKK 141          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: GLOB_TOBAC (Floral homeotic protein GLOBOSA OS=Nicotiana tabacum GN=GLO PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.655e-23
Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEKIN 667
            MGRG++++KRIEN  NRQVT+SKRR G LKKA EISVLCDA V+VIIF+  GK+ E+S+ S ++ IL++Y +               +R W  +  NL  +I+ ++K+             QI+L RH  GED+ SL+ +++  LE  LD  L TS + K N
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGILKKAKEISVLCDARVSVIIFASSGKMHEFSSTSLVD-ILDQYHKLT------------GRRLWDAKHENLDNEINKVKKDN---------DNMQIEL-RHLKGEDITSLNHRELMMLEDALDNGL-TSIRNKQN 138          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 2.241e-23
Identity = 58/159 (36.48%), Postives = 94/159 (59.12%), Query Frame = 2
Query:  185 GRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            GRG++++KRIEN  NRQVTF KRR G LKKA+E+SVLCDAEVA+I+FS +G+L+EYS +S ++  +ERY++         +    + + +  E   L+ +I  +Q +                  R  +GE + S+S K+++ LE +L+ ++     +K
Sbjct:   18 GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNS-VKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSN-----------------RQLMGETIGSMSPKELRNLEGRLERSITRIRSKK 158          

HSP 2 Score: 30.4166 bits (67), Expect = 2.241e-23
Identity = 14/39 (35.90%), Postives = 23/39 (58.97%), Query Frame = 1
Query:  646 IRSRKNQLMPESISELQKKEKSIEEPXHLLVKQIKEREK 762
            IRS+KN+L+   I  +QK+E  +     +L  +I E E+
Sbjct:  154 IRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENER 192          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: SOC1_ARATH (MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.687e-23
Identity = 63/153 (41.18%), Postives = 95/153 (62.09%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            M RG+ Q+KRIEN  +RQVTFSKRR G LKKA E+SVLCDAEV++IIFS KGKL+E+++ S M+  ++RY R+            E+ ++   E  N+  KI+ L+ ++                 R  LGE + + S++++QQ+EQQL+ ++
Sbjct:    1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFAS-SNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASK-----------------RKLLGEGIGTCSIEELQQIEQQLEKSV 135          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL14_ARATH (Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.289e-23
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            M RG+ ++KRIEN  +RQVTFSKRR G LKKA E+SVLCDAEVA+IIFS +GKL+E+S+ S + K +ERY++           +  SQ++   E   L  KI+ L+ +                  R  +GE L++ S++++QQLE QLD +L
Sbjct:    1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSSSSIPKTVERYQKRIQDLGSNHKRNDNSQQSKD-ETYGLARKIEHLEIST-----------------RKMMGEGLDASSIEELQQLENQLDRSL 135          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD31_ORYSJ (MADS-box transcription factor 31 OS=Oryza sativa subsp. japonica GN=MADS31 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.214e-23
Identity = 62/153 (40.52%), Postives = 91/153 (59.48%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRGRV+LK+IEN  NRQVTFSKRR G LKKA+E+++LCDA++ VI+FS  GK++EYS+     +I   ++RY  A           QR              ++Q+  R   ++         + R Y+G+DL SL+L+D+  LEQQ++ +L
Sbjct:    1 MGRGRVELKKIENPTNRQVTFSKRRMGLLKKANELAILCDAQIGVIVFSGTGKMYEYSSPPW--RIANIFDRYLKAPSTRFEEMDVQQR--------------IIQEMTRMKDENNRLR----IIMRQYMGDDLASLTLQDVSNLEQQIEFSL 133          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 67/156 (42.95%), Postives = 90/156 (57.69%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSC------MEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLD 631
            MGRG++++KRIEN  NRQVTFSKRRAG LKKA EI VLCDAEV V+IFS  GKL +Y T         + +ILE+Y+  +             +  W  +  +L A+ID ++K              QI+L RH  GEDL SL  K++  +E+ L+
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNS------------GKILWDEKHKSLSAEIDRVKKEN---------DNMQIEL-RHMKGEDLNSLQPKELIAIEEALN 134          
The following BLAST results are available for this feature:
BLAST of EY649646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
AGL1_ARATH2.095e-2438.65Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MADS3_ORYSJ3.552e-2437.25MADS-box transcription factor 3 OS=Oryza sativa su... [more]
FBP24_PETHY4.355e-2442.86MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24... [more]
MAD25_ORYSJ7.429e-2436.25MADS-box transcription factor 25 OS=Oryza sativa s... [more]
GLOB_TOBAC1.655e-2342.59Floral homeotic protein GLOBOSA OS=Nicotiana tabac... [more]
AG_ARATH2.241e-2336.48Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
SOC1_ARATH3.687e-2341.18MADS-box protein SOC1 OS=Arabidopsis thaliana GN=S... [more]
AGL14_ARATH6.289e-2343.14Agamous-like MADS-box protein AGL14 OS=Arabidopsis... [more]
MAD31_ORYSJ8.214e-2340.52MADS-box transcription factor 31 OS=Oryza sativa s... [more]
MADS4_ORYSJ1.073e-2242.95MADS-box transcription factor 4 OS=Oryza sativa su... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649646 ID=EY649646; Name=EY649646; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGANAAGAAGAAATCCTTTTATGAGATATTAGATTTGGGTT
TCTGTTTTTGGAGGGGCTTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAA
AAAAAAAAGAATAGAAATTATCAAATAATCTGTGTGAGACAGAGAGAGAG
TGAGACAGATCATACAGAAGAATTCATAACAATGGGAAGAGGTAGGGTTC
AGCTGAAGAGAATAGAGAACAAGATCAATCGCCAAGTTACCTTTTCCAAA
CGGAGAGCTGGCTTCTTGAAGAAAGCTCATGAGATCTCTGTGTTATGTGA
TGCTGAAGTTGCTGTTATTATCTTCTCTCACAAAGGGAAGCTCTTTGAAT
ACTCCACTGACTCTTGCATGGAAAAGATACTGGAACGCTATGAGAGGTAC
GCCTATGCTGAGAGACAGCTGATTGCCCCTGATCCTGAATCACAGCGTAA
CTGGCCCCTGGAGTGCAACAACCTTAAGGCTAAGATAGATCTTCTGCAGA
AAAACCAAAGATGTTCTTCCAAAAGTACATTCTACACTGGTTCTCAAATT
GACCTCTTCAGGCACTATTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAA
AGACATCCAACAGTTGGAGCAACAGCTGGACACCGCTCTCAACACATCAG
ATCAAGAAAAAATCAACTCATGCCAGAGTCCATCTCTGAGCTTCAGAAAA
AAGAAAAGTCTATAGAGGAGCCANNACACTTGCTGGTAAAGCAGATTAAG
GAGAGAGAGAAGGCTGCAGCGCACAAGCTCAGTGGGGGGATCAAATNCAA
AACCAGTTCCCACACATTATTCTTCTACTTNCCAGCCACTNNCTGCTTAG
ACTGGGCGGTGCCTACCAGACAGGCATCGA
back to top