EY649646

Overview
NameEY649646
Unique NameEY649646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD29_ORYSJ (MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 60/151 (39.74%), Postives = 89/151 (58.94%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSC-MEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLD 631
            MGRG++++KRIEN  NRQVTFSKRR G LKKA+E++VLCDA V V+IFS  GK+FEY + +C + +++E Y+       + I  D +      +E   ++ +++ L                     R + G+DL +L+L DI  LEQQL+
Sbjct:    1 MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSPTCSLRELIEHYQTVTNTHFEEINHDQQIF----VEMTRMRNEMEKLDGG-----------------IRRFTGDDLSNLTLADINDLEQQLE 130          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL21_ARATH (Agamous-like MADS-box protein AGL21 OS=Arabidopsis thaliana GN=AGL21 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.073e-22
Identity = 57/153 (37.25%), Postives = 94/153 (61.44%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTAL 640
            MGRG++ ++RI++  +RQVTFSKRR G +KKA E+++LCDAEV +IIFS  GKL+++++ S M+ +++RY +    ++QL+ P  E  + W  E   L+ ++  LQ+N                  R  +GE L  LS+ ++  LE Q++ +L
Sbjct:    1 MGRGKIVIQRIDDSTSRQVTFSKRRKGLIKKAKELAILCDAEVGLIIFSSTGKLYDFASSS-MKSVIDRYNKSKIEQQQLLNPASE-VKFWQREAAVLRQELHALQENH-----------------RQMMGEQLNGLSVNELNSLENQIEISL 134          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSJ (MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.390e-22
Identity = 61/156 (39.10%), Postives = 97/156 (62.18%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYA--YAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALN 643
            M RGR +LKRIEN  +RQVTFSKRR G LKKA E+SVLCDAEVA+I+FS +G+L+E+++   ++K ++RY+ Y   +   + I  D +  ++  L    L  K++ L +++                 R  LGE+LE  S+++++ LE +L+ +L+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTL---GLAKKLEALDESR-----------------RKILGENLEGFSIEELRGLEMKLEKSLH 136          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD56_ORYSI (MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.121e-22
Identity = 61/156 (39.10%), Postives = 97/156 (62.18%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYA--YAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALN 643
            M RGR +LKRIEN  +RQVTFSKRR G LKKA E+SVLCDAEVA+I+FS +G+L+E+++   ++K ++RY+ Y   +   + I  D +  ++  L    L  K++ L +++                 R  LGE+LE  S+++++ LE +L+ +L+
Sbjct:    1 MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASAPSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTL---GLAKKLEALDESR-----------------RKILGENLEGCSIEELRGLEMKLEKSLH 136          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: JOIN_SOLLC (MADS-box protein JOINTLESS OS=Solanum lycopersicum GN=J PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 65/160 (40.62%), Postives = 96/160 (60.00%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            M R ++Q+K+I+N   RQVTFSKRR G  KKA E+SVLCDA+VA+IIFS  GKLF+YS+ S M++ILER + ++    +L  P  E Q       + L  +I   +K+ R                R   GE+L+ L+++++QQLE+ L+T L+   + K
Sbjct:    1 MAREKIQIKKIDNSTARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFDYSSSS-MKQILERRDLHSKNLEKLDQPSLELQLVENSNYSRLSKEIS--EKSHR---------------LRQMRGEELQGLNIEELQQLERSLETGLSRVIERK 142          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL15_ARATH (Agamous-like MADS-box protein AGL15 OS=Arabidopsis thaliana GN=AGL15 PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 4.076e-22
Identity = 68/160 (42.50%), Postives = 90/160 (56.25%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGRG++++KRIEN  +RQVTFSKRR+G LKKA E+SVLCDAEVAVI+FS  GKLFEYS+   M++ L RY  +  +       D         E + LK ++  LQ+                       G+ L  L+ K++Q LEQQL  AL T  + K
Sbjct:    1 MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSSTG-MKQTLSRYGNHQSSSASKAEED-------CAEVDILKDQLSKLQEKH-----------------LQLQGKGLNPLTFKELQSLEQQLYHALITVRERK 135          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD57_ORYSJ (MADS-box transcription factor 57 OS=Oryza sativa subsp. japonica GN=MADS57 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.324e-22
Identity = 58/163 (35.58%), Postives = 99/163 (60.74%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQ-RNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEKIN 667
            MGRG++ ++RI+N  +RQVTFSKRR G LKKA E+S+LCDAEV +++FS  G+L+E+S+ + M+ +++RY     A+ +L+  +  S+ + W  E  +L+ ++  LQ++                  +  +GE+L  L ++D+Q LE +L+ +L      K N
Sbjct:    1 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELSILCDAEVGLVVFSSTGRLYEFSSTN-MKTVIDRYTN---AKEELLGGNATSEIKIWQREAASLRQQLHNLQESH-----------------KQLMGEELSGLGVRDLQGLENRLEISLRNIRMRKDN 142          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: DEF21_ANTMA (MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.953e-22
Identity = 65/162 (40.12%), Postives = 100/162 (61.73%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDS-CMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEKI 664
            MGRG++++KRIEN  +RQVTFSKRR+G +KK HE+SVLCDA++ +I+FS KGKL EY T    M++I++R     Y + + I P+ E+ R  P   N+   K     K +  +         Q++L R Y G+DL ++  +++ +LE+ LD +LN     K+
Sbjct:    1 MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTPPFSMKQIIDR-----YVKAKGILPEMEN-RAGPHADNDQVIKELTRMKEETLN--------LQLNLQR-YKGDDLSTVRFEELTELEKLLDQSLNKVRARKL 147          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS2_PETHY (Floral homeotic protein PMADS 2 OS=Petunia hybrida GN=PMADS2 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 61/156 (39.10%), Postives = 92/156 (58.97%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNT 646
            MGRG++++KRIEN  NRQVT+SKRR G +KKA EI+VLCDA+V++IIF + GK+ EY S  + +  +L+ Y++               +R W  +  NL  +ID ++K              Q+ L RH  GED+ SL+ K++  LE+ L   L++
Sbjct:    1 MGRGKIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAKVSLIIFGNSGKMHEYCSPSTTLPDMLDGYQK------------TSGRRLWDAKHENLSNEIDRIKKEN---------DNMQVKL-RHLKGEDINSLNHKELMVLEEGLTNGLSS 134          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MAD23_ORYSJ (MADS-box transcription factor 23 OS=Oryza sativa subsp. japonica GN=MADS23 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.186e-21
Identity = 58/162 (35.80%), Postives = 93/162 (57.41%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEKIN 667
            MGRG++++KRI+N  +RQVTFSKRR+G  KKA E+S+LCDAEV +++FS   +L+++++ S M+ I+ERY        Q +    E+ + W  E  +L+ ++  LQ                 +  R  LG+ L  L ++D+Q LE +L+ +L      K N
Sbjct:    1 MGRGKIEIKRIDNATSRQVTFSKRRSGLFKKARELSILCDAEVGLLVFSSTSRLYDFASSS-MKSIIERYNETKEDPHQTMNASSEA-KLWQQEAASLRQQLHNLQ-----------------EYHRQLLGQQLSGLDVEDLQNLESKLEMSLKNIRLRKDN 143          
The following BLAST results are available for this feature:
BLAST of EY649646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
MAD29_ORYSJ1.073e-2239.74MADS-box transcription factor 29 OS=Oryza sativa s... [more]
AGL21_ARATH1.073e-2237.25Agamous-like MADS-box protein AGL21 OS=Arabidopsis... [more]
MAD56_ORYSJ2.390e-2239.10MADS-box transcription factor 56 OS=Oryza sativa s... [more]
MAD56_ORYSI3.121e-2239.10MADS-box transcription factor 56 OS=Oryza sativa s... [more]
JOIN_SOLLC4.076e-2240.63MADS-box protein JOINTLESS OS=Solanum lycopersicum... [more]
AGL15_ARATH4.076e-2242.50Agamous-like MADS-box protein AGL15 OS=Arabidopsis... [more]
MAD57_ORYSJ5.324e-2235.58MADS-box transcription factor 57 OS=Oryza sativa s... [more]
DEF21_ANTMA6.953e-2240.12MADS-box protein defh21 OS=Antirrhinum majus GN=DE... [more]
MADS2_PETHY1.186e-2139.10Floral homeotic protein PMADS 2 OS=Petunia hybrida... [more]
MAD23_ORYSJ1.186e-2135.80MADS-box transcription factor 23 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649646 ID=EY649646; Name=EY649646; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGANAAGAAGAAATCCTTTTATGAGATATTAGATTTGGGTT
TCTGTTTTTGGAGGGGCTTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAA
AAAAAAAAGAATAGAAATTATCAAATAATCTGTGTGAGACAGAGAGAGAG
TGAGACAGATCATACAGAAGAATTCATAACAATGGGAAGAGGTAGGGTTC
AGCTGAAGAGAATAGAGAACAAGATCAATCGCCAAGTTACCTTTTCCAAA
CGGAGAGCTGGCTTCTTGAAGAAAGCTCATGAGATCTCTGTGTTATGTGA
TGCTGAAGTTGCTGTTATTATCTTCTCTCACAAAGGGAAGCTCTTTGAAT
ACTCCACTGACTCTTGCATGGAAAAGATACTGGAACGCTATGAGAGGTAC
GCCTATGCTGAGAGACAGCTGATTGCCCCTGATCCTGAATCACAGCGTAA
CTGGCCCCTGGAGTGCAACAACCTTAAGGCTAAGATAGATCTTCTGCAGA
AAAACCAAAGATGTTCTTCCAAAAGTACATTCTACACTGGTTCTCAAATT
GACCTCTTCAGGCACTATTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAA
AGACATCCAACAGTTGGAGCAACAGCTGGACACCGCTCTCAACACATCAG
ATCAAGAAAAAATCAACTCATGCCAGAGTCCATCTCTGAGCTTCAGAAAA
AAGAAAAGTCTATAGAGGAGCCANNACACTTGCTGGTAAAGCAGATTAAG
GAGAGAGAGAAGGCTGCAGCGCACAAGCTCAGTGGGGGGATCAAATNCAA
AACCAGTTCCCACACATTATTCTTCTACTTNCCAGCCACTNNCTGCTTAG
ACTGGGCGGTGCCTACCAGACAGGCATCGA
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