EY649646

Overview
NameEY649646
Unique NameEY649646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length880
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: FLC_ARATH (MADS-box protein FLOWERING LOCUS C OS=Arabidopsis thaliana GN=FLC PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.315e-17
Identity = 54/160 (33.75%), Postives = 93/160 (58.13%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGR ++++KRIENK +RQVTFSKRR G ++KA ++SVLCDA VA+++ S  GKL+ +S+   + KIL+RY +                       ++LKA    L    +  +  + Y   ++ +    +G +++++S+  + QLE+ L+TAL+ +  +K
Sbjct:    1 MGRKKLEIKRIENKSSRQVTFSKRRNGLIEKARQLSVLCDASVALLVVSASGKLYSFSSGDNLVKILDRYGKQ--------------------HADDLKA----LDHQSKALNYGSHYELLEL-VDSKLVGSNVKNVSIDALVQLEEHLETALSVTRAKK 135          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: AGL31_ARATH (Agamous-like MADS-box protein AGL31 OS=Arabidopsis thaliana GN=AGL31 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 5.157e-17
Identity = 52/160 (32.50%), Postives = 92/160 (57.50%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            MGR +V++KRIENK +RQVTFSKRR G ++KA ++S+LC++ +AV++ S  GKL++ ++   M KI++RYE +   E + +    +++   P     LK  ++++Q     S                    ++++ S+  +  LE+QL+TAL+ +   K
Sbjct:    1 MGRKKVEIKRIENKSSRQVTFSKRRNGLIEKARQLSILCESSIAVLVVSGSGKLYKSASGDNMSKIIDRYEIHHADELEALDLAEKTRNYLP-----LKELLEIVQSKLEES--------------------NVDNASVDTLISLEEQLETALSVTRARK 135          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MEF2D_XENLA (Myocyte-specific enhancer factor 2D homolog OS=Xenopus laevis GN=mef2d PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERY 400
            MGR ++Q++RI ++ NRQVTF+KR+ G +KKA+E+SVLCD E+A+IIF+H  KLF+Y STD  M+K+L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MEF2D_RAT (Myocyte-specific enhancer factor 2D OS=Rattus norvegicus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERY 400
            MGR ++Q++RI ++ NRQVTF+KR+ G +KKA+E+SVLCD E+A+IIF+H  KLF+Y STD  M+K+L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MEF2D_MOUSE (Myocyte-specific enhancer factor 2D OS=Mus musculus GN=Mef2d PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERY 400
            MGR ++Q++RI ++ NRQVTF+KR+ G +KKA+E+SVLCD E+A+IIF+H  KLF+Y STD  M+K+L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MEF2D_HUMAN (Myocyte-specific enhancer factor 2D OS=Homo sapiens GN=MEF2D PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.149e-16
Identity = 42/74 (56.76%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERY 400
            MGR ++Q++RI ++ NRQVTF+KR+ G +KKA+E+SVLCD E+A+IIF+H  KLF+Y STD  M+K+L +Y  Y
Sbjct:    1 MGRKKIQIQRITDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNHSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MADS1_PETHY (Floral homeotic protein PMADS 1 OS=Petunia hybrida GN=PMADS1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 51/161 (31.68%), Postives = 86/161 (53.42%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEYSTDSCMEK-ILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            M RG++Q+KRIEN+ NRQVT+SKRR G  KKA+E++VLCDA+V++I+ S  GKL E+ + S   K + + Y++    +             W      ++ ++  L++  R   K            R  +GE L  L+ + +++L + +D +L    + K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFISPSITTKQLFDLYQKTVGVDL------------WNSHYEKMQEQLRKLKEVNRNLRKE----------IRQRMGESLNDLNYEQLEELMENVDNSLKLIRERK 139          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.365e-16
Identity = 56/161 (34.78%), Postives = 88/161 (54.66%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERYAYAERQLIAPDPESQRNWPLECNNLKAKIDLLQKNQRCSSKSTFYTGSQIDLFRHYLGEDLESLSLKDIQQLEQQLDTALNTSDQEK 661
            M RG++Q+KRIEN+ NRQVT+SKRR G  KKAHE+SVLCDA+V++I+ S   KL EY S  +  +++ ++Y++        +  D  S     ++  +LK K++ + +N R                R  +GE L  L  + I  L + +D +L    + K
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQK-------AVGVDLWSSHYEKMQ-EHLK-KLNEVNRNLRRE-------------IRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERK 139          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MEF2A_XENLA (Myocyte-specific enhancer factor 2A homolog OS=Xenopus laevis GN=mef2a PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.830e-15
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERY 400
            MGR ++Q+ RI ++ NRQVTF+KR+ G +KKA+E+SVLCD E+A+IIF+   KLF+Y STD  M+K+L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72          
BLAST of EY649646 vs. ExPASy Swiss-Prot
Match: MEF2A_RAT (Myocyte-specific enhancer factor 2A OS=Rattus norvegicus GN=Mef2a PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.830e-15
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  182 MGRGRVQLKRIENKINRQVTFSKRRAGFLKKAHEISVLCDAEVAVIIFSHKGKLFEY-STDSCMEKILERYERY 400
            MGR ++Q+ RI ++ NRQVTF+KR+ G +KKA+E+SVLCD E+A+IIF+   KLF+Y STD  M+K+L +Y  Y
Sbjct:    1 MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTD--MDKVLLKYTEY 72          
The following BLAST results are available for this feature:
BLAST of EY649646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 118
Match NameE-valueIdentityDescription
FLC_ARATH2.315e-1733.75MADS-box protein FLOWERING LOCUS C OS=Arabidopsis ... [more]
AGL31_ARATH5.157e-1732.50Agamous-like MADS-box protein AGL31 OS=Arabidopsis... [more]
MEF2D_XENLA1.149e-1656.76Myocyte-specific enhancer factor 2D homolog OS=Xen... [more]
MEF2D_RAT1.149e-1656.76Myocyte-specific enhancer factor 2D OS=Rattus norv... [more]
MEF2D_MOUSE1.149e-1656.76Myocyte-specific enhancer factor 2D OS=Mus musculu... [more]
MEF2D_HUMAN1.149e-1656.76Myocyte-specific enhancer factor 2D OS=Homo sapien... [more]
MADS1_PETHY4.365e-1631.68Floral homeotic protein PMADS 1 OS=Petunia hybrida... [more]
DEFA_ANTMA4.365e-1634.78Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MEF2A_XENLA2.830e-1555.41Myocyte-specific enhancer factor 2A homolog OS=Xen... [more]
MEF2A_RAT2.830e-1555.41Myocyte-specific enhancer factor 2A OS=Rattus norv... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649646 ID=EY649646; Name=EY649646; organism=Citrus sinensis; type=EST; length=880bp
CCACGCGTCCGANAAGAAGAAATCCTTTTATGAGATATTAGATTTGGGTT
TCTGTTTTTGGAGGGGCTTTGGTTGTTGGGTTTCTTTGGGGGAAAGAGAA
AAAAAAAAGAATAGAAATTATCAAATAATCTGTGTGAGACAGAGAGAGAG
TGAGACAGATCATACAGAAGAATTCATAACAATGGGAAGAGGTAGGGTTC
AGCTGAAGAGAATAGAGAACAAGATCAATCGCCAAGTTACCTTTTCCAAA
CGGAGAGCTGGCTTCTTGAAGAAAGCTCATGAGATCTCTGTGTTATGTGA
TGCTGAAGTTGCTGTTATTATCTTCTCTCACAAAGGGAAGCTCTTTGAAT
ACTCCACTGACTCTTGCATGGAAAAGATACTGGAACGCTATGAGAGGTAC
GCCTATGCTGAGAGACAGCTGATTGCCCCTGATCCTGAATCACAGCGTAA
CTGGCCCCTGGAGTGCAACAACCTTAAGGCTAAGATAGATCTTCTGCAGA
AAAACCAAAGATGTTCTTCCAAAAGTACATTCTACACTGGTTCTCAAATT
GACCTCTTCAGGCACTATTTGGGAGAAGATTTAGAGTCTCTGTCCCTCAA
AGACATCCAACAGTTGGAGCAACAGCTGGACACCGCTCTCAACACATCAG
ATCAAGAAAAAATCAACTCATGCCAGAGTCCATCTCTGAGCTTCAGAAAA
AAGAAAAGTCTATAGAGGAGCCANNACACTTGCTGGTAAAGCAGATTAAG
GAGAGAGAGAAGGCTGCAGCGCACAAGCTCAGTGGGGGGATCAAATNCAA
AACCAGTTCCCACACATTATTCTTCTACTTNCCAGCCACTNNCTGCTTAG
ACTGGGCGGTGCCTACCAGACAGGCATCGA
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