EY702805

Overview
NameEY702805
Unique NameEY702805
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length874
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.603e-13
Identity = 59/183 (32.24%), Postives = 84/183 (45.90%), Query Frame = 3
Query:  339 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN-----IPINLVFAVI---AEIVLVGGAEYYRIHNGLDL--EDKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGEGQWRTL 857
            P YL G + GD G+DP  L++ P+D   +   ++++ RWAMLG AG +IPE   K G    PE  W     L L G    YF  +     + ++  +  I    +I   G      I     L   +  +PG  F+PL  A   +     K  E+ NGRLAMLA  GF +     G+G +  L
Sbjct:   43 PAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPE--W-----LRLPGKE-TYFASSSTALRVHMSSTYVEIRRWQDIKNPGSVNQDPIFKSYSLPPHECGYPGRVFNPLNFAPLEN-----KEKELANGRLAMLAFLGFLVQHNVHGKGPFENL 212          
BLAST of EY702805 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.400e-13
Identity = 57/171 (33.33%), Postives = 81/171 (47.37%), Query Frame = 3
Query:  339 PEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYRIHNGLDLE----DKLHPGGSFDPLGLAKDPDQFALLKVNEIKNGRLAMLAMPGFFLPA*APGE 839
            P +LTGE P D G+DP  ++  P  +++ +  E+ HAR +ML   G I+PE   K          WF+ G   +DG           I L F ++A   +    EY+R + G + +    D+ +PG  FDPL L  D  +       EIKNGRLAM  + G      A GE
Sbjct:  169 PAHLTGEYPADRGFDPLSVAADPTVYARMRVSEVFHARLSMLAIVGSIVPELLGK--------GAWFEVGN-SVDG-----------IKLGFILMA---IAAPTEYWRGNGGFNWDKGTADRSYPG--FDPLKLTTDYTK------REIKNGRLAMTGLLGLTFQYLATGE 308          
The following BLAST results are available for this feature:
BLAST of EY702805 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
CB120_HORVU2.603e-1332.24Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
LH15_EUGGR3.400e-1333.33Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-012-D11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702805 ID=EY702805; Name=EY702805; organism=Citrus sinensis; type=EST; length=874bp
TCCGTCGACCCCGCGTCCGCTCTAACCTAACAAGCAGCAGCAGCAACACT
CTGAAGATGGCTTCATTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGG
AGTTAAGGAGATGCTTGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGA
CTTCAGCTCCAGGTGCATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTC
TTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGT
CTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAA
TTTTCTTGCCCGAGGGTCTCTTGGACAGATCTGAGATCCCTGAGTACTTG
ACCGGAGAAGTTCCCGGAGACTATGGTTACGATCCTTTTGGTCTCAGCAA
GAAACCAGACGACTTCAGCAAATATCAGGCATATGAATTGATTCATGCCA
GATGGGCCATGCTTGGTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAAC
AAGTTTGGTGCTAACTGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGC
TCTACTTCTTGATGGAAACACATTGAACTACTTCGGAAAGAACATCCCAA
TCAACCTTGTTTTTGCTGTCATTGCTGAGATTGTTCTTGTAGGTGGTGCT
GAATATTATAGAATCCACAACGGTTTGGATTTGGAAGACAAGCTTCACCC
AGGTGGCTCATTTGACCCCCTGGGATTAGCAAAGGATCCTGACCAATTTG
CATTGCTAAAAGTGAACGAGATCAAGAATGGAAGACTTGCCATGCTTGCC
ATGCCTGGGTTCTTTCTCCCAGCTTAGGCACCAGGGGAAGGCCAGTGGAG
AACCTTGCTAAACATTCACGGAAT
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