EY649589

Overview
NameEY649589
Unique NameEY649589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.422e-51
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 3
Query:  498 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPVNN 806
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNG+LAMFSMFGFFVQAIVTG+GPLENLADHLADPVNN
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 103          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.422e-51
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 3
Query:  498 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPVNN 806
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNG+LAMFSMFGFFVQAIVTG+GPLENLADHLADPVNN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.422e-51
Identity = 97/103 (94.17%), Postives = 101/103 (98.06%), Query Frame = 3
Query:  498 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPVNN 806
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNG+LAMFSMFGFFVQAIVTG+GPLENLADHLADPVNN
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 252          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.132e-51
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 3
Query:  498 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPVNN 806
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNG+LAMFSMFGFFVQAIVTG+GPLENLADH+ADPVNN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 4.132e-51
Identity = 96/103 (93.20%), Postives = 101/103 (98.06%), Query Frame = 3
Query:  498 SLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPVNN 806
            SL+HAQSILAIWACQVVLMGAVEGYRIAGGPLGEV DPLYPGGSFDPLGLA+DPE FAELKVKEIKNG+LAMFSMFGFFVQAIVTG+GPLENLADH+ADPVNN
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNN 254          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.868e-49
Identity = 96/111 (86.49%), Postives = 101/111 (90.99%), Query Frame = 3
Query:  477 LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAG-GPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPVNN 806
            LDYLGNPSL+HAQSILAIWA QV+LMGAVEGYR+AG GPLGE  D LYPGGSFDPL    DPE FAELKVKEIKNG+LAMFSMFGFFVQAIVTG+GPLENLADHLADPVNN
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGDGPLGEAEDLLYPGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNN 111          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 3.179e-35
Identity = 102/257 (39.69%), Postives = 132/257 (51.36%), Query Frame = 3
Query:   54 MATSTMALSSSFVGKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFV-QAIVTGQGPLENLADHLADPVNNMPG 815
            MA+S+   S S VG    LAPS     +G       T S  V+  + W           F G+P P++L G  PGD+G+D  GL+  PE F + +E E+ HCRWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + +   E  R       +     YPGG+FDPLG + DP  F ELK+KEIKNG+LAM +  GF V Q+   G GPLENLA HLADP +N  G
Sbjct:    1 MASSSGLRSCSAVGVPSLLAPSSRSGRSGLPFCAYATTSGRVTMSAEW-----------FPGQPRPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQRTMEK---DPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNNIG 234          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.519e-32
Identity = 87/196 (44.39%), Postives = 110/196 (56.12%), Query Frame = 3
Query:  237 GEP-PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFV-QAIVTGQGPLENLADHLADPVNNMPG 815
            G+P PSYL G  PGD+G+D+ GL   P    + +E E+IHCRWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + +  VE  R       +     YPGG+FDPLG + DP  F ELKVKEIKNG+LA+ ++ GF V Q+   G GPLENLA HLADP +N  G
Sbjct:   52 GQPRPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR---SMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNNIG 235          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.571e-32
Identity = 71/103 (68.93%), Postives = 80/103 (77.67%), Query Frame = 3
Query:  498 SLIHAQSILAIWACQVVLMGAVEGYRI---AGGPLGEVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADP 797
            +LIHA+S+LAI A QV+LMGAVEGYR    A G  GE  D LYPGG FDPLGLADDP+ F ELKVKEIKNG+LAM  M GF+ QAIVTG+GP+EN   HL DP
Sbjct:    4 ALIHAKSLLAILATQVLLMGAVEGYRAGNTAPGQFGEDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDP 106          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 9.571e-32
Identity = 84/206 (40.78%), Postives = 113/206 (54.85%), Query Frame = 3
Query:  204 PDRVKYLGPFSGE-PPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWA-----CQVVLMGAVEGYRIAGGPLGEVTDPLYPGGS-FDPLGL-ADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADP 797
            PDR  +   F G  PP +L G  PGD+G+D  GL++DPE+   N++ E++HCRWAMLGA G   PELL + G+      W+ AG Q +      +    +L   + +L  WA       ++  G V    I        TD  YPGG  FDPLG  +  P    EL+ KEIKNG+LAM ++ G + Q I TG GP++NL  HLADP
Sbjct:   63 PDRPLW---FPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQEY------FTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          
The following BLAST results are available for this feature:
BLAST of EY649589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB2D_SOLLC2.422e-5194.17Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC2.422e-5194.17Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC2.422e-5194.17Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2F_SOLLC4.132e-5193.20Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.132e-5193.20Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB21_RAPSA3.868e-4986.49Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB121_HORVU3.179e-3539.69Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC2.519e-3244.39Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB21_EUGGR9.571e-3268.93Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB12_SOLLC9.571e-3240.78Chlorophyll a-b binding protein 7, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-C09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649589 ID=EY649589; Name=EY649589; organism=Citrus sinensis; type=EST; length=876bp
CCCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTAC
GGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGC
TTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATC
CACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGG
GGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGC
CTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAG
TGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCT
GATGACCCGGAAGGCTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGG
GAAGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCA
CCGGGCAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTC
AATAACATGCCTGGGCCTACGCCAACACTTTGTCCCCGGAAAGGAGCTTC
GGTGATAAGAGTTTTCTCTTTTCGGT
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