EY649589

Overview
NameEY649589
Unique NameEY649589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.798e-15
Identity = 85/275 (30.91%), Postives = 114/275 (41.45%), Query Frame = 3
Query:   54 MATSTMA----LSSSFV-----GKAVNLAPSGNELSNGGRISMRKTGSKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQG 761
            MAT++ A    LSSSF+      +A+  AP    +  GG  + ++    + ++   W    R    G  +   P +L G  PGDYG+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S   +   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LKV EIK+ +LAM +M  F+ +A   GQG
Sbjct:    1 MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARV--GGAATPKRFTVLAAAAKKSWIPAVR----GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEA---GQG 247          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.040e-14
Identity = 66/202 (32.67%), Postives = 85/202 (42.08%), Query Frame = 3
Query:  246 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVTDPL--------YPGGS-FDPLGLA---------DDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQG 761
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAM   LG          G  +    WF+AGA            +P  I   S  ++   Q++LMG VE  R                P  +  +          YPGG  FDPL LA          D E    LK+ EIK+ +LAM +M  F+ +A   GQG
Sbjct:   68 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV-------GQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEA---GQG 247          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.276e-14
Identity = 66/202 (32.67%), Postives = 86/202 (42.57%), Query Frame = 3
Query:  246 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYR--------------------IAGGPLGEVTDPLYPGGSF-DPLGLAD---------DPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQG 761
            P +L G  PGD+G+D  GL  DP      RE E+IH RWAML  LG    +  A  G+      WF+AGA            +P  +   S   +   Q++LMG VE  R                     A        +  YPGG F DPL LA          D +    LK+ EIK+ +LAM +M  F+ +A   GQG
Sbjct:   73 PEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQ--AWTGIP-----WFEAGA------------DPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEA---GQG 252          
BLAST of EY649589 vs. ExPASy Swiss-Prot
Match: LH15_EUGGR (Light-harvesting complex I LH35 proteins (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.833e-13
Identity = 65/167 (38.92%), Postives = 79/167 (47.31%), Query Frame = 3
Query:  312 PETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIAGGPLG----EVTDPLYPGGSFDPLGLADDPEGFAELKVKEIKNGKLAMFSMFGFFVQAIVTGQGPLENLADHLADPV 800
            P  + + R  EV + R AML  +GCV+PELL  NGV F   VW K     F                    A+ + QVV    +E +R  GG  G    E  D  YPG  FDP  L  +       K  EIKNG+LAM  MFG  VQ  VT QGP+ NL +HL  P+
Sbjct:    1 PTVYERMRVAEVFNGRLAMLAIVGCVYPELLG-NGVWF--EVWNKVDFYRF--------------------ALISLQVV--APLEYWRGNGG-FGWDGEEKYDRSYPG--FDPCNLTTE-----YTKAAEIKNGRLAMIGMFGLEVQNHVTAQGPVANLIEHLRHPL 134          
The following BLAST results are available for this feature:
BLAST of EY649589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
CB4A_SOLLC2.798e-1530.91Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4B_SOLLC4.040e-1432.67Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
CB4_SPIOL5.276e-1432.67Chlorophyll a-b binding protein CP24, chloroplasti... [more]
LH15_EUGGR5.833e-1338.92Light-harvesting complex I LH35 proteins (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-100-001-C09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY649589 ID=EY649589; Name=EY649589; organism=Citrus sinensis; type=EST; length=876bp
CCCACGCGTCCGCTCGAACACTAGAGCTCACCAACAACTCTGATCATTGT
AAAATGGCAACCTCGACCATGGCTCTCTCCTCATCATTCGTCGGCAAGGC
TGTGAACCTTGCCCCTTCAGGCAATGAGCTGAGCAATGGTGGCCGCATCT
CCATGCGTAAAACCGGGAGCAAGTCTGTTTCTTCAGGTAGCCCGTGGTAC
GGCCCGGACAGAGTCAAGTACTTGGGTCCATTCTCTGGCGAGCCCCCAAG
CTACTTGACTGGTGAGTTCCCTGGTGACTACGGTTGGGACACTGCTGGGC
TTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCGAAGTCATC
CACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTCCCGGAGCT
CTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTTCAAGGCGG
GGGCCCAGATCTTCAGCGAGGGCGGGCTTGACTACTTGGGGAACCCAAGC
CTGATCCACGCTCAGAGCATCTTGGCCATCTGGGCTTGCCAGGTGGTCTT
GATGGGAGCCGTTGAGGGTTACAGAATTGCTGGAGGGCCGCTCGGTGAAG
TGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCT
GATGACCCGGAAGGCTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGG
GAAGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCA
CCGGGCAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTC
AATAACATGCCTGGGCCTACGCCAACACTTTGTCCCCGGAAAGGAGCTTC
GGTGATAAGAGTTTTCTCTTTTCGGT
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