EG358336

Overview
NameEG358336
Unique NameEG358336
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length495
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_ELEIN (Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEPSSMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_OXYGR (Tubulin alpha chain OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.985e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_ANEPH (Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUBA1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.985e-23
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_TOXGO (Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.817e-23
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_NEOCA (Tubulin alpha chain OS=Neospora caninum GN=TUBA PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 7.817e-23
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_EUPOC (Tubulin alpha chain OS=Euplotes octocarinatus PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 49/53 (92.45%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAPVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSSFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_EUGGR (Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHF+LSSYAP+ISAEKAYHEQLSV EITNA FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFVLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMAKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_VOLCA (Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN=TUBA1 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITNA FEP+SMM KCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA1_CHLRE (Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii GN=TUBA1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.021e-22
Identity = 48/53 (90.57%), Postives = 50/53 (94.34%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSYAP+ISAEKAYHEQLSV EITNA FEP+SMM KCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYAPIISAEKAYHEQLSVAEITNAAFEPASMMVKCDPRHGKY 312
[Close]
BLAST of EG358336 vs. ExPASy Swiss-Prot
Match: TBA_CHLVU (Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.333e-22
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 2 
Query:    2 VPYPRIHFMLSSYAPVISAEKAYHEQLSVPEITNAVFEPSSMMAKCDPRHGKY 160
            VPYPRIHFMLSSY+PVISAEKAYHEQLSV EITN+ FEP+SMMAKCDPRHGKY
Sbjct:  260 VPYPRIHFMLSSYSPVISAEKAYHEQLSVAEITNSAFEPASMMAKCDPRHGKY 312
The following BLAST results are available for this feature:
BLAST of EG358336 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 141
Match NameE-valueIdentityDescription
TBA1_ELEIN2.687e-2394.34Tubulin alpha-1 chain OS=Eleusine indica GN=TUBA1 ... [more]
TBA_OXYGR5.985e-2392.45Tubulin alpha chain OS=Oxytricha granulifera PE=3 ... [more]
TBA1_ANEPH5.985e-2392.45Tubulin alpha-1 chain OS=Anemia phyllitidis GN=TUB... [more]
TBA_TOXGO7.817e-2390.57Tubulin alpha chain OS=Toxoplasma gondii PE=3 SV=1[more]
TBA_NEOCA7.817e-2390.57Tubulin alpha chain OS=Neospora caninum GN=TUBA PE... [more]
TBA_EUPOC1.021e-2292.45Tubulin alpha chain OS=Euplotes octocarinatus PE=3... [more]
TBA_EUGGR1.021e-2290.57Tubulin alpha chain OS=Euglena gracilis GN=TUBA PE... [more]
TBA1_VOLCA1.021e-2290.57Tubulin alpha-1/alpha-2 chain OS=Volvox carteri GN... [more]
TBA1_CHLRE1.021e-2290.57Tubulin alpha-1 chain OS=Chlamydomonas reinhardtii... [more]
TBA_CHLVU1.333e-2290.57Tubulin alpha chain OS=Chlorella vulgaris GN=TUBA ... [more]

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Properties
Property NameValue
Genbank description2c9 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0002c9, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358336 ID=EG358336; Name=EG358336; organism=Citrus sinensis; type=EST; length=495bp
TGTACCGTATCCTCGTATCCATTTCATGCTTTCATCATATGCCCCTGTCA
TCTCTGCTGAAAAAGCATACCATGAACAGCTTTCAGTTCCAGAGATCACA
AATGCAGTCTTTGAGCCCTCAAGCATGATGGCCAAATGTGACCCCAGGCA
CGGGAAGTACTCAAGACGAGCCAGTTGTCATGAACTCGCCGGATAACGGT
AATGGCAGCCAGCCACCACCAGCTCCTCCCCTCACTTCCAGAAATGATCC
TCATTTTCTTAGGAGATCTCAAAGGCAAACCCGCTCAAAGTATAGGAGTC
ATTCGCCAGCCACCCAAACCCCAACAGCCCCCAACGTCCGCAAACATAGA
CAATCAACTGCCAACCATCGAGCCACCATCACCTTCAAACCAAACCAAGT
CTTTATTACCATCTAGCCCGCAACGATCACAAGCCACACAAGACCAATCG
GGAGATGCACAACCAGCTGTCACAACCCTTATGCACCCCCCCCCG
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