EG358334

Overview
NameEG358334
Unique NameEG358334
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length508
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EG358334 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 36/146 (24.66%), Postives = 69/146 (47.26%), Query Frame = 2
Query:   71 LEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILH-NMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNG 505
            ++WE  F+    P+   ++   P    +Y  A  ++ ++L +LA  +L +                          K++ YP CP+PE+  G+ AHTD   +  +   + V GLQL     W+    + +SI++++GD +E+++NG
Sbjct:   87 VDWESTFYLRHLPQS--NLYDIPDMSDEYRTAMKDFGKRLENLAEDLLDLLCENLGLEKGYLKKVFHGTKGPTFGTKVSNYPACPKPEMIKGLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNG 230          
BLAST of EG358334 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.927e-11
Identity = 26/66 (39.39%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  305 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 502
            +YYP CPQP+L LG+  H+D S LT +L + + GLQ+ +   WV    VP ++++++GD +++++N
Sbjct:  221 HYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITN 286          
BLAST of EG358334 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 44/169 (26.04%), Postives = 74/169 (43.79%), Query Frame = 2
Query:   17 SGKIQGYGSKLANNASGQLEWEDYFFHLIYPEDKRDMSIWPKTPS-------DYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 502
            SG+  GY S      S +L W++        +  R  S+              + +   EY   + SL+ KI+ +                         M++NYYP C +P+L LG   H D ++LT +  + V GLQ+F +++W + +  P + +++IGDT   LSN
Sbjct:  130 SGESVGYASSFTGRFSTKLPWKETLSFRFCDDMSRSKSVQDYFCDALGHGFQPFGKVYQEYCEAMSSLSLKIMELLGLSLGVKRDYFREFFEENDSI---MRLNYYPPCIKPDLTLGTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSN 295          
BLAST of EG358334 vs. ExPASy Swiss-Prot
Match: ACCO_DENCR (1-aminocyclopropane-1-carboxylate oxidase OS=Dendrobium crumenatum GN=ACO PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.517e-11
Identity = 42/149 (28.19%), Postives = 69/149 (46.31%), Query Frame = 2
Query:   71 LEWEDYFFHLIYPEDKRDMSIWPKTPSDYTEATSEYARQLRSLATKILAVXXXXXXXXXXXXXXXXXXXXXXXXQM--KINYYPKCPQPELALGVEAHTDVSALTFILHN-MVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSNGE 508
            L+WE  FF    P    ++S  P    D      E+A  L  LA ++L +                            K++ YP CP+PEL  G+ AHTD   +  +  +  V GLQL   ++W+    + +SI+++IGD +E+++NG+
Sbjct:   80 LDWESTFFLRHLPTS--NISQVPDLDEDCGSTMKEFALGLEKLAERLLDLLCENLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPELIKGLRAHTDAGGIILLFQDDTVSGLQLLKDEEWIDVPPMRHSIVVNIGDQLEVITNGK 226          
BLAST of EG358334 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 7.324e-11
Identity = 22/66 (33.33%), Postives = 44/66 (66.67%), Query Frame = 2
Query:  305 NYYPKCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYKDKWVTAKCVPNSIILHIGDTIEILSN 502
            +YYP CPQPEL  G   H+D   LT ++ + + GLQ+  +++W+    +P +++++I D +++++N
Sbjct:  251 HYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITN 316          
The following BLAST results are available for this feature:
BLAST of EG358334 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ACCO1_BRAJU1.927e-1124.661-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
ACCH1_ARATH1.927e-1139.391-aminocyclopropane-1-carboxylate oxidase homolog ... [more]
GAOX1_ARATH2.517e-1126.04Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
ACCO_DENCR2.517e-1128.191-aminocyclopropane-1-carboxylate oxidase OS=Dendr... [more]
DV4H_CATRO7.324e-1133.33Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]

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Properties
Property NameValue
Genbank description9h11 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl009h11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358334 ID=EG358334; Name=EG358334; organism=Citrus sinensis; type=EST; length=508bp
ACGCGGGGAGCAGGCTTCGGGAAAGATTCAGGGTTACGGAAGCAAGCTAG
CTAATAATGCTAGTGGCCAGCTTGAGTGGGAGGACTATTTCTTCCACCTT
ATTTATCCTGAAGATAAAAGGGATATGTCCATTTGGCCTAAGACTCCAAG
CGACTATACAGAGGCTACCAGTGAATACGCAAGGCAACTGAGAAGCCTAG
CGACGAAAATTCTGGCAGTGTTGTCACTTGGCTTGGGACTGGAAGAGGGG
AGGCTGGAAAAGGAAGTTGGTGGCCTAGAAGAGCTCCTTCTTCAGATGAA
GATCAATTACTATCCCAAATGCCCTCAACCAGAACTGGCTCTTGGTGTTG
AAGCTCACACAGATGTGAGTGCACTCACTTTCATTCTTCACAACATGGTT
CCGGGCCTGCAGCTCTTCTACAAAGACAAATGGGTGACTGCTAAATGTGT
TCCAAATTCGATCATCTTGCACATTGGTGACACCATTGAAATTCTGAGCA
ATGGCGAG
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