DY306876

Overview
NameDY306876
Unique NameDY306876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1216
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOBK (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Okra / Type B1) GN=atpA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 2.147e-16
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +    + FP +  +  YS +   +  +  E    D+  +RT+A  +LQ E +L EIV+LVG DAL+E D++ LE AK LREDYL QNAF   D +    K   M++ ++ FY+   +A+  G
Sbjct:  407 LRIVKVFWGLDSQLAYRRHFPAINWLNSYSLYLEKISPWMDENVASDWTALRTRAMSLLQEEANLEEIVRLVGIDALSEKDRLKLEVAKSLREDYLQQNAFHEVDTYASLEKQYKMLKLVLFFYDETQRALNAG 540          

HSP 2 Score: 23.0978 bits (48), Expect = 2.147e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  394 PGGDLSEPVTQATLRIVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOBL (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=atpA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.148e-16
Identity = 50/134 (37.31%), Postives = 76/134 (56.72%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +    + FP +  +  YS +   +  +  E    D+  +RT+A  +LQ E +L EIV+LVG DAL+E D++ LE AK LREDYL QNAF   D +    K   M++ ++ FY+   +A+  G
Sbjct:  405 LRIVKVFWGLDSQLAYRRHFPAINWLNSYSLYLEKISPWMDENVASDWTALRTRAMSLLQEEANLEEIVRLVGIDALSEKDRLKLEVAKSLREDYLQQNAFHEVDTYASLEKQYKMLKLVLFFYDETQRALNAG 538          

HSP 2 Score: 23.0978 bits (48), Expect = 2.148e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  392 PGGDLSEPVTQATLRIVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOBH (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=atpA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.148e-16
Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +    + FP +  +  YS +   +  +  E    D+  +R KA  +LQ E  L EIV+LVG DAL+E D++ LE AK LREDYL QNAF   D +    K   M++ ++ FY+ A +A+  G
Sbjct:  405 LRIVKVFWGLDAQLAYRRHFPAINWLNSYSLYIEKISPWMDENVASDWTALRIKAMSLLQEEASLEEIVRLVGIDALSEKDRLKLEVAKSLREDYLQQNAFHEVDTYASLGKQYKMLKLVLFFYDEAQRALNAG 538          

HSP 2 Score: 23.0978 bits (48), Expect = 2.148e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  392 PGGDLSEPVTQATLRIVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOB1 (V-type ATP synthase alpha chain OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=atpA PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.148e-16
Identity = 51/134 (38.06%), Postives = 75/134 (55.97%), Query Frame = -2
Query:  463 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALE-FFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKG 858
            L IV+ F+G   +    + FP +  +  YS +   +  +  E    D+  +R KA  +LQ E  L EIV+LVG DAL+E D++ LE AK LREDYL QNAF   D +    K   M++ ++ FY+ A +A+  G
Sbjct:  405 LRIVKVFWGLDAQLAYRRHFPAINWLNSYSLYIEKISPWMDENVASDWTALRIKAMSLLQEEASLEEIVRLVGIDALSEKDRLKLEVAKSLREDYLQQNAFHEVDTYASLGKQYKMLKLVLFFYDEAQRALNAG 538          

HSP 2 Score: 23.0978 bits (48), Expect = 2.148e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  392 PGGDLSEPVTQATLRIVKVFW 412          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_SULTO (V-type ATP synthase alpha chain OS=Sulfolobus tokodaii GN=atpA PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 2.791e-16
Identity = 50/166 (30.12%), Postives = 90/166 (54.22%), Query Frame = -2
Query:  310 FPFVKLVYFYSSF-STALEFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALVAKFKKLHEDLT 804
            +P +  +  +S++     +++++  DP++  +R    +VL RED+L +IV+LVG ++LAE DK+ LE AKL+++ +L QNA+   D F    K V +MR I  FYN +   + KG  +         I+  +  + Y + + +     E E  L A F  L ++++
Sbjct:  427 YPAINWIQGFSAYVDLVAQWWHKNVDPNWKEMRDTMMKVLIREDELRQIVRLVGPESLAEKDKLVLEAAKLIKDAFLKQNAYDDIDAFSSPQKQVRIMRLIYIFYNQSQDLISKGVPLKKILDKVGPIEPEIIRIKYTIKNDELNKIDEIENKLKATFDSLLKEVS 592          

HSP 2 Score: 24.2534 bits (51), Expect = 2.791e-16
Identity = 11/21 (52.38%), Postives = 12/21 (57.14%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG F+ PVTS       VFW
Sbjct:  395 PGGDFTEPVTSNTLRFVRVFW 415          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_STRZJ (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain JJA) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.628e-16
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  460 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 858
            L IV+ F+G        + FP +  +  YS +  ++  + +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  407 LRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          

HSP 2 Score: 20.7866 bits (42), Expect = 3.628e-16
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT        VFW
Sbjct:  394 PGGDISEPVTQNTLRIVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_STRPN (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.628e-16
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  460 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 858
            L IV+ F+G        + FP +  +  YS +  ++  + +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  407 LRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          

HSP 2 Score: 20.7866 bits (42), Expect = 3.628e-16
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT        VFW
Sbjct:  394 PGGDISEPVTQNTLRIVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_STRPJ (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae (strain ATCC 700669 / Spain 23F-1) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.628e-16
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  460 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 858
            L IV+ F+G        + FP +  +  YS +  ++  + +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  407 LRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          

HSP 2 Score: 20.7866 bits (42), Expect = 3.628e-16
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT        VFW
Sbjct:  394 PGGDISEPVTQNTLRIVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_STRP4 (V-type ATP synthase alpha chain OS=Streptococcus pneumoniae serotype 19F (strain G54) GN=atpA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.628e-16
Identity = 51/135 (37.78%), Postives = 78/135 (57.78%), Query Frame = -2
Query:  460 LSIVR-FFGFGLETWAEKPFPFVKLVYFYSSFSTALEFFYEQFDPDFINIR-TKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGA 858
            L IV+ F+G        + FP +  +  YS +  ++  + +  +    N + T+A   LQRE  L EIV+LVG D+L++ +++T+E AK +REDYL QNAF   D F  F K   M+ NI+ F + AN A+E G+
Sbjct:  407 LRIVKVFWGLDAPLAQRRHFPAINWLTSYSLYKDSVGTYIDGKEKTDWNSKITRAMNYLQRESSLEEIVRLVGIDSLSDNERLTMEIAKQIREDYLQQNAFDSVDTFTSFAKQEAMLSNILTFADQANHALELGS 541          

HSP 2 Score: 20.7866 bits (42), Expect = 3.628e-16
Identity = 10/21 (47.62%), Postives = 10/21 (47.62%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT        VFW
Sbjct:  394 PGGDISEPVTQNTLRIVKVFW 414          
BLAST of DY306876 vs. ExPASy Swiss-Prot
Match: VATA_CLOTH (V-type ATP synthase alpha chain OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=atpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.715e-16
Identity = 46/131 (35.11%), Postives = 71/131 (54.20%), Query Frame = -2
Query:  454 FFGFGLETWAEKPFPFVKLVYFYSSFSTAL-EFFYEQFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVEKGAGM 843
            F+G        + FP +  +  YS +   + ++  E    D+  +R+    +LQ E +L EIV+LVG DAL+  D++TLE AK +REDYL QNAF   D +    K   M++ I+ FY    +A+E G  +
Sbjct:  412 FWGLDSSLAYRRHFPAINWLQSYSLYLDIIGKWISENISRDWETLRSDTMRILQEEAELEEIVRLVGVDALSPSDRLTLEAAKSIREDYLHQNAFHEVDTYTSLNKQYRMLKLILGFYYSGKKALEAGVSI 542          

HSP 2 Score: 23.0978 bits (48), Expect = 4.715e-16
Identity = 11/21 (52.38%), Postives = 11/21 (52.38%), Query Frame = -1
Query:  836 PGGGFSVPVTSAPP*HCAVFW 898
            PGG  S PVT A      VFW
Sbjct:  393 PGGDLSEPVTQATLRIIKVFW 413          
The following BLAST results are available for this feature:
BLAST of DY306876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
VATA_CLOBK2.147e-1637.31V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_CLOBL2.148e-1637.31V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_CLOBH2.148e-1638.06V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_CLOB12.148e-1638.06V-type ATP synthase alpha chain OS=Clostridium bot... [more]
VATA_SULTO2.791e-1630.12V-type ATP synthase alpha chain OS=Sulfolobus toko... [more]
VATA_STRZJ3.628e-1637.78V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRPN3.628e-1637.78V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRPJ3.628e-1637.78V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_STRP43.628e-1637.78V-type ATP synthase alpha chain OS=Streptococcus p... [more]
VATA_CLOTH4.715e-1635.11V-type ATP synthase alpha chain OS=Clostridium the... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DC03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306876 ID=DY306876; Name=DY306876; organism=Citrus sinensis; type=EST; length=1216bp
GCATAAATACATAAATAAGGATTGGACTTCGAACTTTTGATCACTAGTCA
AAAAAAGGAATTGAGGGAACGACAGGAAGAACAAAAAAATACATAATAGA
ATCAAATTTACCACACTGCAACTAGAAGGCCAAACAAGCACTGCAAAGTG
GCATAACATGGACCCACCAACATTTTGGTTCTCCATTCAATGGAACATTG
AGAAGCCAACTGTTGTTACCGTAAGATCAGAGGTGCCGCTGGGACTACAA
AGAATCTAACTTGACACTTTCAATCATCGAGTTTCATCCTCGAGGGCGCG
GAAACCAGCGGTCAGATCCTCGTGCAGCTTTTTGAATTTAGCAACCAGAG
CTGGTTCTCCTTCTGCTGGGTCCTCAAACTTCTGTGATACTAATCTGTAA
AATAGATCTCCCAGCCGATGCTTGATAAGGGTGTAAGTTATCTTCTGACC
ATCCATACCAGCTCCTTTCTCTACGGCCTGATTGGCCAAGTTATAGAAAT
GGATAATGTTACGCATCATCCAAACAGACTTGTAGAAAGGGCAGAACTTG
TCATATGGAGTAAATGCGTTCTGAGCAAGATAGTCCTCCCTCAAAAGCTT
AGCAGTCTCTAGCGTAATCTTATCTCCTTCAGCCAAAGCATCCTTTCCGA
CAAGTTGCACAATTTCATTCAGGTCATCTTCTCTCTGCAACACCTCTCTA
GCCTTTGTCCTGATGTTAATAAAATCCGGATCAAATTGCTCATAGAAAAA
CTCTAATGCTGTTGAAAAACTCGAGTAAAAATAAACCAGTTTTACGAAAG
GAAAAGGCTTCTCCGCCCAAGTTTCTAATCCAAACCCAAAAAACCGCACA
ATGCTAAGGGGGGGCAGATGTTACAGGAACCGAAAAACCCCCTCCAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNCAAAAAGGAAATCCCAAAAAAATTCC
CCGGGCCCTCCCTTTAACAACCCCCCTGGACGCGGGAAAACCCCCGCCGG
TTACCCACAATTAACCCCCCCTCCGCCCCAATCCCCCCCTTTCCCCACCT
CGGCCAAAAAAAACCAAAAAAAAACCCCCCCACCCCAACTCCCCCCTCCC
CCCCCAAAACTTCCCCCCCCCCCCCGCAAAGGGGCCAAAAAGGGGGAAAA
AAATTTTTAAAAACCCCTTTTTTAAAATTTTTTTTGTTTTAAAAAAAATT
CTCTCTCCCTTTTTTA
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