DY306874

Overview
NameDY306874
Unique NameDY306874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1237
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 4.245e-53
Identity = 104/152 (68.42%), Postives = 123/152 (80.92%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +Y++EPDN  KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V A K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+  GLDVD L + HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL L+
Sbjct:    1 MGRYAREPDNAGKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVTAQKECVPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADYSGLDVDRLVVQHIQVNRAACLRRRTYRAHGRINPYMSSPCHIELWLT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 1.235e-52
Identity = 101/152 (66.45%), Postives = 124/152 (81.58%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +Y++EPDN TKSCK+RGS LRVHFKNT E A+AI+ +PL +A+R+L++V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MGRYAREPDNATKSCKSRGSHLRVHFKNTHEAANAIKHMPLRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 1.613e-52
Identity = 103/152 (67.76%), Postives = 121/152 (79.61%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +YSKEP NPTKSCKARGS+LRVHFKNTRETA  I K+PL +A ++L++V    + +PF R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:    1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 2.107e-52
Identity = 102/152 (67.11%), Postives = 123/152 (80.92%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +YS+EP+   KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V+ HK+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MGRYSREPEIAAKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAACLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 8.007e-52
Identity = 99/152 (65.13%), Postives = 122/152 (80.26%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 8.007e-52
Identity = 99/152 (65.13%), Postives = 122/152 (80.26%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D L + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRLVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 1.046e-51
Identity = 98/152 (64.47%), Postives = 123/152 (80.92%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +YS+E DN TKSCKARG +LRVHFKNT ETA AI+++PL +A+R+L+ V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAE+NA+ KGLD D + + HIQVN+AQ  RRRTYRAHGRINPYMSSPCH+E+ L+
Sbjct:    1 MGRYSRESDNVTKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRFLKAVIDQKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAEANADCKGLDADRMVVHHIQVNRAQCLRRRTYRAHGRINPYMSSPCHVEVILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 1.784e-51
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M KY+K   NP KSC+ARGS+LRVHFKNTRETA  I+++PL +A ++L++V   ++ +PF RF GGVGR AQAK +    QGRWP+KSA+F+L+LL+NAESNAE KGLD D L+I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MGKYAKNARNPAKSCRARGSNLRVHFKNTRETAKTIKRMPLRRAIQFLKNVQDKQECVPFRRFNGGVGRCAQAK-QWGTTQGRWPIKSAQFLLELLRNAESNAEFKGLDSDRLFIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 5.190e-51
Identity = 99/152 (65.13%), Postives = 123/152 (80.92%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 505
            M +YS+EPD  +K+CKARGS+LRVHFKNTRETA AI+K+ L +A+ +L++V  HK+ +PF RF GGVGR +QAK +    QGRWP KSA+F+L +L+NAESNA+  GLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:    1 MGRYSREPDVASKTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK-QWGTTQGRWPKKSAEFLLQMLRNAESNADYSGLDVDRLVIEHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEMWLT 151          
BLAST of DY306874 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 5.738e-50
Identity = 95/151 (62.91%), Postives = 117/151 (77.48%), Query Frame = 2
Query:   50 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 502
            M +Y   P+NP + CKA+G++ RVH+KNT ET  AI+ + L KA+ YL +V+ HKQ IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:    1 MARYKFNPENPNRVCKAKGTNFRVHYKNTSETGRAIKGMHLHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
The following BLAST results are available for this feature:
BLAST of DY306874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
RL17_BIPLU4.245e-5368.4260S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]
RL17_PHLPP1.235e-5266.4560S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_DIACI1.613e-5267.7660S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_AGRLI2.107e-5267.1160S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_DROYA8.007e-5265.1360S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_DROME8.007e-5265.1360S ribosomal protein L17 OS=Drosophila melanogast... [more]
RL17_DROPS1.046e-5164.4760S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]
RL17_MACHI1.784e-5165.1360S ribosomal protein L17 OS=Maconellicoccus hirsu... [more]
RL17_CARGR5.190e-5165.1360S ribosomal protein L17 OS=Carabus granulatus GN... [more]
RL17_PECGU5.738e-5062.9160S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2BH01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306874 ID=DY306874; Name=DY306874; organism=Citrus sinensis; type=EST; length=1237bp
GAGCAAACCCACTTCACTGATACAGAGGCAGCATCCAAAATCAGCCACCA
TGGTGAAGTACTCAAAAGAGCCTGACAATCCTACCAAGTCCTGCAAAGCC
AGGGGCTCTGATCTCAGGGTTCATTTTAAGAACACGAGAGAAACTGCCCA
TGCCATCAGGAAATTGCCTTTGACGAAGGCTAAGAGGTATTTGGAGGATG
TTATGGCCCATAAACAGGCCATTCCCTTCACACGATTCTGCGGTGGTGTT
GGACGTACTGCTCAGGCAAAGAATAGGCATCCAAATGGACAGGGACGATG
GCCTGTCAAATCAGCAAAGTTCATTCTTGACTTGCTCAAGAATGCTGAGA
GTAATGCTGAGGTGAAAGGTTTAGATGTTGATGCACTCTACATTTCTCAC
ATCCAAGTCAACCAGGCACAAAAGCAAAGGCGCCGCACATACCGTGCTCA
TGGAAGAATTAATCCTTACATGTCCTCTCCCTGCCATATTGAGTTGACCT
TATCTGAAAAGGAAGAGCCAGTAAAGAAAGAGCCTGAGACCCAGTTGGCA
ACTAGCAAATCAAAGAAGTAATTGTCTGAGGTTTAGCATAGCAATTGGAG
AGTGCATTGATTTTCTATTTTGTGTTCTTGATGAAGTGAGTTTTTTTACC
TTTAATAGTGACTGAGATGTTATTTAGTCAAATCAGACATCATATTTTGT
TTATTTCATATTAAGTCCAGTTTACTGTTTTGTTAGAATCCTCAGTCATA
CTGTTGGAGCTTTATGAAAATTAAAGACTTTTTCAGCTTATTTTGAAGCT
TAGAGATATGGGTGTATGAATTTGTCATTCCAAACCAATTTCATTATCCA
CTAATCGAATCTAATAACTTGTATTGAATTGGTCCGGTTAAACTTCCTTG
TGAGAAATTTATTTGTAAAAAAAAAAAAAAAAAAACTCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAAAGTGGATCCAAATAACAATTCCCCTGGC
CCTCCTTTTTAAACACTCCTGAACGGGGAAAAACCCCGGGCGTTCCCCCA
CTTTAACTCCCCTTTCCCCCCCCCTCCCCCCCTTTTCCCCCCCCGGGGGC
CTAAAAAACCAAAAAAAGCCCCCCCCCCCCTTTCTCCCCCTCCCCCCCCA
ACTTTTCGGCCCCCCCCCCCGCAAAAGGGGCGAAAAAAGGGGGAAAAAAT
TTTGTTAAAAACCAGCCTTTATATAAAATTTTTTTTG
back to top