DY306149
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.499e-16 Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ + +EV+GR+I R+E + K+ Q R LYV NL + LR+ FS S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 87.0409 bits (214), Expect = 1.958e-16 Identity = 55/183 (30.05%), Postives = 90/183 (49.18%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +YV NLP + E+K F G + ++K + G +R+F FV SPE A AV + + + ++ V A+K ++ Q S + LY+ NL V L+E FS N S KV+ S +G S G+GFV+++ EEA A+ ++GK + +PL + Q+ ++ Sbjct: 227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 2.558e-16 Identity = 61/183 (33.33%), Postives = 94/183 (51.37%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV-----NQFDTQE-VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +YV NL S + ++KN F G + ++K GK++ F FV + ++A AV ++FD +E GR + + + R +++ A + Q LYV NL + L+E FS SSKV+ + N G S G GFV+FAT EEA A+S L GK + +PL + Q+ +D Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398 HSP 2 Score: 70.0922 bits (170), Expect = 2.477e-11 Identity = 50/184 (27.17%), Postives = 98/184 (53.26%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVSESNK 771 +YV +L ++ + +++ + F GTVV V + + ++ + +V +P++A A+ + + + G+ IRV ++ + P +RS + +++ NL + L + FS+ N VS KV +S+ G+S GYGFV +A +E A+ AI L+G L + + + F ++ + S +NK Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANK 211
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 2.558e-16 Identity = 53/183 (28.96%), Postives = 93/183 (50.82%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N ++ +F+ G + V+++ G++R F FV + EEAQ AV++ + +EV+GR+I R+E + K+ Q R LYV NL + LR+ F S+KV+ E G S G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 4.363e-16 Identity = 51/182 (28.02%), Postives = 93/182 (51.10%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750 +Y+ N+ + AE ++L P G + V + + + G ++ F FV + E A+ AV++ + +EV+G+ + + E + KK ++ A+ LYV NL + LR F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+ D Sbjct: 229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKD 409
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 85.1149 bits (209), Expect = 7.441e-16 Identity = 60/198 (30.30%), Postives = 100/198 (50.51%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--PRPQRSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 798 +YV NL A+ + +F P G V V + + GK+R F FV + E A AV + + +E+ G+ + V A+K ++ +R + E K L+V NL + S L E F F ++S V + G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+ DV S E++ + +Q Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRK-DVRRSQLEQQIQARNQ 436
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.658e-15 Identity = 52/183 (28.42%), Postives = 92/183 (50.27%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N +K F G + V+++ GK+R F FV+ E+AQ AV+ + ++++G+ I +VE + K+ Q R LYV NL + LR+ F+ + S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.828e-15 Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +YV NLP E++ F G + +++ + G +R F FV E A +AV + + + ++ V E +KF++ R R + LY+ NL V L+E FS N SSKV+ +G S G+GFV+++ EEA A+S ++GK + +PL + Q+ +D Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 4.823e-15 Identity = 50/183 (27.32%), Postives = 93/183 (50.82%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753 +Y+ N + +K +F G + V+++ GK++ F FV+ E+AQ AV++ + ++++G+ + +VE + K+ Q R LYV NL + LR+ F S+KV+ E GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 73.559 bits (179), Expect = 2.241e-12 Identity = 48/193 (24.87%), Postives = 99/193 (51.30%), Query Frame = 1 Query: 226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 798 I++ NL S + + F+ G ++ +++ + G ++ + FV + E A+ A+++ + ++ R + F +FK R +R A AR + +Y+ N + L+E F + P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK + +E ++ E + +D+ Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDR 287
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 3.126e-14 Identity = 58/197 (29.44%), Postives = 92/197 (46.70%), Query Frame = 1 Query: 181 QTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750 Q K E+T+ +Y N+ + E + LF G + + + + GK++ F FV EAQ AV++ + G+ + V A+K + + RS A E K LY+ N+ LRE F A F ++S + + G S G+GFV ++ EEA A+S ++GK L RPL + Q+ D Sbjct: 216 QAKIEETRANFTN--VYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEF-APFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKD 409 The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 93
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bpback to top |