DY306149

Overview
NameDY306149
Unique NameDY306149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1055
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.499e-16
Identity = 54/183 (29.51%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         ++ +F+  G  + V+++    G++R F FV   + EEAQ AV++ + +EV+GR+I       R+E   + K+   Q       R     LYV NL   +    LR+ FS      S+KV+ E   G S G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.958e-16
Identity = 55/183 (30.05%), Postives = 90/183 (49.18%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +YV NLP   +  E+K  F   G +    ++K + G +R+F FV   SPE A  AV + +   +   ++ V  A+K        ++   Q   S   +     LY+ NL   V    L+E FS   N  S KV+  S +G S G+GFV+++  EEA  A+  ++GK +  +PL +   Q+ ++
Sbjct:  227 VYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 2.558e-16
Identity = 61/183 (33.33%), Postives = 94/183 (51.37%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAV-----NQFDTQE-VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +YV NL  S +  ++KN F   G +    ++K   GK++ F FV   + ++A  AV     ++FD +E   GR  +    +   + R +++    A + Q   LYV NL   +    L+E FS      SSKV+ + N G S G GFV+FAT EEA  A+S L GK +  +PL +   Q+ +D
Sbjct:  217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398          

HSP 2 Score: 70.0922 bits (170), Expect = 2.477e-11
Identity = 50/184 (27.17%), Postives = 98/184 (53.26%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRL-KFGQKNDDVSESNK 771
            +YV +L ++ + +++ + F   GTVV V + +     ++  + +V   +P++A  A+ + +   + G+ IRV ++ +   P  +RS +         +++ NL   +    L + FS+  N VS KV  +S+ G+S GYGFV +A +E A+ AI  L+G  L  + + +  F ++ +  S +NK
Sbjct:   38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR--DPSVRRSGAG-------NIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSS-GQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANK 211          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 2.558e-16
Identity = 53/183 (28.96%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         ++ +F+  G  + V+++    G++R F FV   + EEAQ AV++ + +EV+GR+I       R+E   + K+   Q       R     LYV NL   +    LR+ F       S+KV+ E   G S G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 4.363e-16
Identity = 51/182 (28.02%), Postives = 93/182 (51.10%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750
            +Y+ N+    + AE ++L  P G  + V + + + G ++ F FV   + E A+ AV++ + +EV+G+ +       + E   + KK   ++     A+     LYV NL  +     LR  F A F  ++S  V   + G S G+GFV +++ +EA  A+S ++GK +  +PL +   Q+ D
Sbjct:  229 VYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKD 409          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 7.441e-16
Identity = 60/198 (30.30%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKK--PRPQRSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDDVSESNKEEEDVSEDQ 798
            +YV NL      A+ + +F P G V  V +   + GK+R F FV   + E A  AV + + +E+ G+ + V  A+K ++     +R   +   E   K     L+V NL   + S  L E F   F  ++S  V   + G+S G+GFV F++ EEA  AI+ ++ + + G+PL +   Q+  DV  S  E++  + +Q
Sbjct:  241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRK-DVRRSQLEQQIQARNQ 436          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.658e-15
Identity = 52/183 (28.42%), Postives = 92/183 (50.27%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N         +K  F   G  + V+++    GK+R F FV+    E+AQ AV+  + ++++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ F+   +  S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.828e-15
Identity = 54/187 (28.88%), Postives = 89/187 (47.59%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +YV NLP      E++  F   G +    +++ + G +R F FV     E A +AV + +   +   ++ V           E  +KF++ R  R   +        LY+ NL   V    L+E FS   N  SSKV+    +G S G+GFV+++  EEA  A+S ++GK +  +PL +   Q+ +D
Sbjct:  231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNP-QGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 4.823e-15
Identity = 50/183 (27.32%), Postives = 93/183 (50.82%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKNDD 753
            +Y+ N     +   +K +F   G  + V+++    GK++ F FV+    E+AQ AV++ + ++++G+ +       +VE   + K+   Q       R     LYV NL   +    LR+ F       S+KV+ E   GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  193 VYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          

HSP 2 Score: 73.559 bits (179), Expect = 2.241e-12
Identity = 48/193 (24.87%), Postives = 99/193 (51.30%), Query Frame = 1
Query:  226 IYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKN-DDVSESNKEEEDVSEDQ 798
            I++ NL  S     + + F+  G ++  +++  + G ++ + FV   + E A+ A+++ +   ++ R +   F  +FK  R +R A   AR  +   +Y+ N    +    L+E F   + P  S  V   + G+S G+GFVSF   E+A+ A+  ++GK++ G+ + +   QK  +  +E  ++ E + +D+
Sbjct:  101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDR 287          
BLAST of DY306149 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.126e-14
Identity = 58/197 (29.44%), Postives = 92/197 (46.70%), Query Frame = 1
Query:  181 QTKPEQTQKQNIRRKIYVFNLPWSFSVAEIKNLFAPCGTVVDVEIIKHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFESNEGRSAGYGFVSFATKEEAEAAISSLDGKELMGRPLRLKFGQKND 750
            Q K E+T+       +Y  N+    +  E + LF   G +    + + + GK++ F FV      EAQ AV++    +  G+ + V  A+K  +   +  RS  A   E   K     LY+ N+        LRE F A F  ++S  +  +  G S G+GFV ++  EEA  A+S ++GK L  RPL +   Q+ D
Sbjct:  216 QAKIEETRANFTN--VYAKNVDPEVTDDEFEKLFTKFGKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEF-APFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKD 409          
The following BLAST results are available for this feature:
BLAST of DY306149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 93
Match NameE-valueIdentityDescription
EPAB_XENTR1.499e-1629.51Embryonic polyadenylate-binding protein OS=Xenopus... [more]
PABP5_ARATH1.958e-1630.05Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP2_ARATH2.558e-1633.33Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
EPABA_XENLA2.558e-1628.96Embryonic polyadenylate-binding protein A OS=Xenop... [more]
PABP_CRYNE4.363e-1628.02Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU7.441e-1630.30Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA1.658e-1528.42Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP3_ARATH2.828e-1528.88Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
PABPA_XENLA4.823e-1527.32Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP_USTMA3.126e-1429.44Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3DA11RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306149 ID=DY306149; Name=DY306149; organism=Citrus sinensis; type=EST; length=1055bp
GCAGCAGCAACGTCAATCTTCTTAACCAACTACCCTTTTTCGTTTTCGTG
CTTATTTCCCAAACTACCGCACTGTATAAAGCTCCTCCATTCTTCCAATT
CTACTCCTTCACTTATCTATAATTTTCCAACACGAAATGTTTGCCTTCAA
GTATGCTCAACTTTGCAAGACACAACAGTACAAACAAAACCAGAACAAAC
ACAGAAACAGAATATAAGGAGAAAGATATATGTGTTTAATTTGCCTTGGT
CTTTCTCTGTTGCAGAAATCAAGAATCTCTTTGCCCCATGTGGAACTGTT
GTAGATGTTGAGATTATAAAGCACAAAGGTGGGAAAAACAGAAACTTTGC
ATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGCTGCCGTTAATCAAT
TCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGGTTGAGTTTGCAAAG
AAATTCAAGAAACCACGACCTCAACGTTCTGCAAGTGCCCCTGCTAGAGA
AACACAACATAAGCTTTATGTGTCGAATCTTTCTTGGAAAGTTAGATCTA
CTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATCCTGTTTCCTCCAAG
GTTGTTTTTGAGAGCAATGAAGGAAGATCCGCTGGGTATGGCTTTGTCTC
ATTTGCCACAAAGGAAGAAGCAGAAGCAGCAATTTCTTCTTTGGATGGCA
AGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCGGTCAAAAGAATGAT
GATGTATCAGAGAGTAACAAGGAAGAGGAAGATGTATCTGAGGATCAATC
TGCAGAGTCATAGCTATTCCAATTTTTTGGTGGTTTGCAGAATAACAGCG
CCATCAAAATCAGACACGGTAAGCTTTATGGCATCCTCCATTAAAGTGAT
GGAAGACATTCTCCTTGGATCAATCATTTTTGCCTTCACTTTCCTTTTCC
TTTTTTCCCAGGGAAAAGGCTTAATTGACAGTTCCCTTTATTCCAATTCT
AAAAAATTTCTTTCCAAAAAGAAAAGAAAATATGTTTGTATGCCTAATAA
TTTAT
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