EY702762

Overview
NameEY702762
Unique NameEY702762
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length499
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSD1_PICAB (Levopimaradiene synthase, chloroplastic OS=Picea abies GN=TPS-LAS PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.892e-17
Identity = 51/142 (35.92%), Postives = 80/142 (56.34%), Query Frame = 2
Query:   17 MRTLEARRFIDVYESGPD--------------MNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVESHVLDLPNK 400
            M  LEAR +I+ Y  GP+               N   LELAK+D+N VQ++H ++L+ + RWW  +G  E L F R+RV E +F     +FEP+      +    +    ++DD+YD +GTLD+L+LF+D+V+   L L ++
Sbjct:  502 MPRLEARSYIEHY--GPNDVWLGKTMYMMPYISNEKYLELAKLDFNHVQSLHQKELRDLRRWWTSSGFTE-LKFTRERVTEIYFSPASFMFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDDLKLFSDSVKKWDLSLVDR 640          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TASY_TAXCH (Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.892e-17
Identity = 50/127 (39.37%), Postives = 75/127 (59.06%), Query Frame = 2
Query:   29 EARRFIDVYESG-----------PDM-NPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVE 373
            EAR +ID Y+             P + N   LELAK+D+NIVQ++H E+LK ++RWWK++G+ + +NF R RV E +F +    FEP+          +  L  L DD+ D++ TLDEL+ FT+ V+
Sbjct:  510 EARSYIDSYDDDYVWERKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGMAD-INFTRHRVAEVYFSSA--TFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVK 633          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSD1_GINBI (Levopimaradiene synthase, chloroplastic OS=Ginkgo biloba GN=LPS PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.132e-16
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 2
Query:   17 MRTLEARRFID------------VYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAV 370
            M  LEAR +I+            VY+     N   LELAK+D+N+VQA+H ++ +++  WW+++G  + L F R R VE +F     +FEP+        A  + L  ++DD+YD +G+LD+L+LF++AV
Sbjct:  515 MPRLEARSYIEQFGSNDVWLGKTVYKMLYVSNEKYLELAKLDFNMVQALHQKETQHIVSWWRESGFND-LTFTRQRPVEMYFSVAVSMFEPEFAACRIAYAKTSCLAVILDDLYDTHGSLDDLKLFSEAV 643          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSDA_ABIGR (Limonene synthase, chloroplastic OS=Abies grandis GN=ag10 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.479e-16
Identity = 54/154 (35.06%), Postives = 85/154 (55.19%), Query Frame = 2
Query:   26 LEARRFIDVYESG--------PDMN-PILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVESHVLD----LPNKHAVAYYKTHDCGHQIV 448
            LEAR +I+VYE          P MN   LL+LAK+++NI  ++   +L+ +SRWWK++G   +L F R R VE +         P+   +      V  L+T++DD+YD +GT++EL+LFTDA++   L     LP      Y   + C +++V
Sbjct:  285 LEARNYIEVYEQSGYESLNEMPYMNMKKLLQLAKLEFNIFHSLQLRELQSISRWWKESG-SSQLTFTRHRHVEYYTMASCISMLPKHSAFRMEFVKVCHLVTVLDDIYDTFGTMNELQLFTDAIKRWDLSTTRWLPEYMKGVYMDLYQCINEMV 437          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSD2_ABIGR (Myrcene synthase, chloroplastic OS=Abies grandis GN=ag2 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.932e-16
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   26 LEARRFIDVYES------GPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVE 373
            LEAR +ID  E         +    LLELAK+++NI  ++  ++L+Y+ RWWK++ L  KL FAR R VE +        +P+   +    A +  L+T++DD+YD +GT+DELELFT A++
Sbjct:  278 LEARNYIDTLEKDTSAWLNKNAGKKLLELAKLEFNIFNSLQQKELQYLLRWWKESDL-PKLTFARHRHVEFYTLASCIAIDPKHSAFRLGFAKMCHLVTVLDDIYDTFGTIDELELFTSAIK 398          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSDB_ABIGR (Limonene/alpha-pinene synthase, chloroplastic OS=Abies grandis GN=ag11 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.523e-16
Identity = 55/153 (35.95%), Postives = 82/153 (53.59%), Query Frame = 2
Query:   26 LEARRFIDVY-----ESGPDMNPI----LLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVE----SHVLDLPNKHAVAYYKTHDCGHQI 445
            LEAR +IDVY     ES  +M  +    LL+LAK+++NI  ++  ++L+Y+SRWWK +     L F R R VE +        EP+   +         LLT++DD+YD +GTLDEL+LFT A +    S    LP      Y   + C +++
Sbjct:  285 LEARNYIDVYGQDSYESSNEMPYVNTQKLLKLAKLEFNIFHSLQQKELQYISRWWKDS-CSSHLTFTRHRHVEYYTMASCISMEPKHSAFRLGFVKTCHLLTVLDDMYDTFGTLDELQLFTTAFKRWDLSETKCLPEYMKAVYMDLYQCLNEL 436          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSD1_PINTA (Levopimaradiene synthase, chloroplastic OS=Pinus taeda GN=LPS PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.620e-16
Identity = 49/139 (35.25%), Postives = 75/139 (53.96%), Query Frame = 2
Query:   17 MRTLEARRFIDVYESGPD--------------MNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVESHVLDL 391
            M  LEAR +I+ Y  GP+               N   LELAK+D+N VQ  H ++L+ + RWW  +G  + L F R+RV E +F     +FEP+      +    +    ++DD+YD +GTLD L+LF+++V+   L L
Sbjct:  493 MPRLEARSYIENY--GPNDVWLGKTMYMMPNISNEKYLELAKLDFNRVQFFHRQELQDIRRWWNSSGFSQ-LGFTRERVAEIYFSPASFLFEPEFATCRAVYTKTSNFTVILDDLYDAHGTLDNLKLFSESVKRWDLSL 628          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSD3_ABIGR (Pinene synthase, chloroplastic OS=Abies grandis GN=ag3 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.643e-15
Identity = 47/118 (39.83%), Postives = 70/118 (59.32%), Query Frame = 2
Query:   26 LEARRFIDVYESGPD------MNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFT 361
            LEAR +I V+    +       +  LLELAK+++NI Q++   +L+ + RWWK++G  E + F R R VE +       FEPQ   +    A    L+T++DD+YD +GT+DELELFT
Sbjct:  279 LEARNYIQVFGQDTENTKSYVKSKKLLELAKLEFNIFQSLQKRELESLVRWWKESGFPE-MTFCRHRHVEYYTLASCIAFEPQHSGFRLGFAKTCHLITVLDDMYDTFGTVDELELFT 395          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: TPSD8_ABIGR (Beta-phellandrene synthase, chloroplastic OS=Abies grandis GN=ag8 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 6.214e-15
Identity = 49/131 (37.40%), Postives = 75/131 (57.25%), Query Frame = 2
Query:   17 MRTLEARRFIDVYESGPDMNPIL-------------LELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKLNFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAV 370
            M  LE R ++DV+  G   +P L             LELAK+++NI  ++  ++L+Y+SRWW  +GL E L F R R VE +  +     EP+   +    A    L+T++DD+YD +GT+DE+ELF +AV
Sbjct:  273 MPRLETRNYLDVF--GHPTSPWLKKKRTQYLDSEKLLELAKLEFNIFHSLQQKELQYLSRWWIHSGLPE-LTFGRHRHVEYYTLSSCIATEPKHSAFRLGFAKTCHLITVLDDIYDTFGTMDEIELFNEAV 400          
BLAST of EY702762 vs. ExPASy Swiss-Prot
Match: BARS_ARATH (Alpha-barbatene synthase OS=Arabidopsis thaliana GN=BS PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 5.260e-14
Identity = 43/121 (35.54%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   17 MRTLEARRFIDVYESGPDMNPILLELAKVDYNIVQAIH*EDLKYVSRWWKKTGLGEKL--NFARDRVVENFFWTVGDIFEPQLGYWTRMSAMVNWLLTLIDDVYDVYGTLDELELFTDAVE 373
            ++ L AR +I  YE   D +  LL+LAK+++  +Q  + ++LK ++ WW K      L  NF R+R VE +F  +   FEPQ      MSA +  ++T +DD  D YG++ E+E   D +E
Sbjct:  211 IQALVAREYISFYEHEEDHDETLLKLAKLNFKFLQLHYFQELKTITMWWTKLDHTSNLPPNF-RERTVETWFAALMMYFEPQFSLGRIMSAKLYLVITFLDDACDTYGSISEVESLADCLE 330          
The following BLAST results are available for this feature:
BLAST of EY702762 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
TPSD1_PICAB3.892e-1735.92Levopimaradiene synthase, chloroplastic OS=Picea a... [more]
TASY_TAXCH3.892e-1739.37Taxadiene synthase OS=Taxus chinensis GN=TDC1 PE=2... [more]
TPSD1_GINBI1.132e-1636.15Levopimaradiene synthase, chloroplastic OS=Ginkgo ... [more]
TPSDA_ABIGR1.479e-1635.06Limonene synthase, chloroplastic OS=Abies grandis ... [more]
TPSD2_ABIGR1.932e-1639.34Myrcene synthase, chloroplastic OS=Abies grandis G... [more]
TPSDB_ABIGR2.523e-1635.95Limonene/alpha-pinene synthase, chloroplastic OS=A... [more]
TPSD1_PINTA5.620e-1635.25Levopimaradiene synthase, chloroplastic OS=Pinus t... [more]
TPSD3_ABIGR3.643e-1539.83Pinene synthase, chloroplastic OS=Abies grandis GN... [more]
TPSD8_ABIGR6.214e-1537.40Beta-phellandrene synthase, chloroplastic OS=Abies... [more]
BARS_ARATH5.260e-1435.54Alpha-barbatene synthase OS=Arabidopsis thaliana G... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-H11-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702762 ID=EY702762; Name=EY702762; organism=Citrus sinensis; type=EST; length=499bp
CCACGCGTCCGGGAGGATGCGAACATTGGAGGCAAGGCGGTTCATCGATG
TATACGAAAGTGGACCAGACATGAACCCTATCTTGCTCGAGCTTGCTAAA
GTTGACTATAATATTGTGCAAGCAATACACTAAGAGGATCTCAAATATGT
GTCAAGGTGGTGGAAGAAAACAGGACTTGGGGAGAAGTTGAATTTTGCAA
GAGACAGAGTAGTGGAGAATTTCTTCTGGACCGTGGGGGATATATTCGAA
CCTCAGCTTGGATATTGGACAAGGATGTCTGCAATGGTTAATTGGCTTTT
AACATTAATCGATGATGTTTATGATGTCTATGGGACCTTGGACGAGCTTG
AGCTATTCACTGATGCAGTTGAGAGTCATGTACTAGATCTCCCAAATAAA
CATGCAGTTGCGTACTATAAGACTCATGACTGTGGACACCAAATCGTTCC
TCCTCATAATAAATAAATATTATTTAAGTGTCTTAAAAAAAAAAAAAAA
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