DY306112

Overview
NameDY306112
Unique NameDY306112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length821
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYC_ENCCU (Serine hydroxymethyltransferase, cytosolic OS=Encephalitozoon cuniculi GN=SHMT-1 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 69/182 (37.91%), Postives = 106/182 (58.24%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLK--DFVATTQSANF--QSEIAKLRHDVEEYAKQFP 535
            P LQGGPHNHTI G++ AL  A T E+  Y  +V+ N  +    L  +G ++++GGT+NH+LLV+L++ G+DG+ VE + +A+ I+ N+N + G+ S + P GIR+GT A+T+RGF  E+  +V       VKL    +  T G K+   D    T  A      ++  LR  V   A+ +P
Sbjct:  279 PMLQGGPHNHTIAGIASALLHAGTPEFAEYTRRVVENSRELCSRLQSLGLDILTGGTDNHMLLVDLRSTGVDGAAVEHMCDALGISLNRNAIVGNSSPLSPSGIRVGTYAVTARGFGPEEMREVGDIIGGVVKLC---REMTGGRKMSKADLHRVTSDARVMGSEQVLVLRRRVCALAEAYP 457          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_THEP1 (Serine hydroxymethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 62/130 (47.69%), Postives = 83/130 (63.85%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 388
            PG+QGGP  H I   +V  K+A T+E+K YQ+QV+ N  K A+   + GY +VSGGT+ HL LV+L  K I G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  EE+  ++A   D
Sbjct:  254 PGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMID 383          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_THEMA (Serine hydroxymethyltransferase OS=Thermotoga maritima GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 62/130 (47.69%), Postives = 83/130 (63.85%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 388
            PG+QGGP  H I   +V  K+A T+E+K YQ+QV+ N  K A+   + GY +VSGGT+ HL LV+L  K I G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  EE+  ++A   D
Sbjct:  254 PGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQKQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMID 383          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_EUBR3 (Serine hydroxymethyltransferase OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 62/126 (49.21%), Postives = 82/126 (65.08%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVA 376
            PG+QGGP  H I   +V  K+A   E+K YQ+Q++ N     + L   G ++VS GT+NHL+LV+L   G+ G  +EK+L+A HI ANKNT+P D     V  GIR+GTPA TSRG  E+DF KVA
Sbjct:  256 PGIQGGPLMHVIAAKAVCFKEALQPEFKEYQKQIVKNAQALCKGLQSRGIKIVSDGTDNHLMLVDLTPFGLTGKSIEKLLDAAHITANKNTIPNDPQKPFVTSGIRLGTPAATSRGLKEDDFDKVA 381          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_ACIC1 (Serine hydroxymethyltransferase OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.613e-28
Identity = 71/185 (38.38%), Postives = 100/185 (54.05%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGTKLKDFVATTQSANFQSEIAKLRHDVEEYAKQFPTIGFEK 553
            PGLQGGPHNHT   ++VAL +A   E++ Y   ++ N +  A+ LL  G++LVSGGT+NHL+LV+L +KG+ G  V + L+   I  N NTVP D      P GIR+GTPA+TSRG    +  ++A + D       K   E          A  Q         ++  +V E  K FPT G ++
Sbjct:  259 PGLQGGPHNHTTAAIAVALLEAMQPEFRDYARNIVANAAVLAEELLARGFDLVSGGTDNHLILVDLTSKGVAGKPVARALDRAGIELNYNTVPFDPRKPFDPSGIRLGTPAVTSRGMGPAEMRQIAAWIDEVTTAVAKGDEEA-------LAAVEQ---------RVAGEVRELTKNFPTPGLDR 427          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_XANCP (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.412e-28
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 376
            PG+QGGP  H I   +VA K+A   E+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A
Sbjct:  258 PGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLA 383          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_XANCB (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain B100) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.412e-28
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 376
            PG+QGGP  H I   +VA K+A   E+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A
Sbjct:  258 PGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLA 383          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_XANC8 (Serine hydroxymethyltransferase OS=Xanthomonas campestris pv. campestris (strain 8004) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.412e-28
Identity = 60/126 (47.62%), Postives = 82/126 (65.08%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 376
            PG+QGGP  H I   +VA K+A   E+K YQ+QV+ N    A TL+  GY++VSGGTENHL+LV++  + + G   E  L   HI  NKN+VP D  S  V  G+R+GTPA+T+RG+ E+D   +A
Sbjct:  258 PGIQGGPLMHVIAAKAVAFKEALEPEFKTYQQQVVKNAQAMANTLIARGYKIVSGGTENHLMLVDMIGRDVSGKDAEAALGKAHITVNKNSVPNDPRSPFVTSGLRLGTPAITTRGYQEQDCVDLA 383          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_THESQ (Serine hydroxymethyltransferase OS=Thermotoga sp. (strain RQ2) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.412e-28
Identity = 62/130 (47.69%), Postives = 82/130 (63.08%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFD 388
            PG+QGGP  H I   +V  K+A T+E+K YQ QV+ N  K A+   + GY +VSGGT+ HL LV+L  K I G   EK LE+  I  NKNT+P +  S  V  GIR+GTPA+T+RG  EE+  ++A   D
Sbjct:  254 PGIQGGPLMHVIAAKAVCFKEAMTEEFKEYQNQVVKNAKKMAEEFQKRGYRIVSGGTDTHLFLVDLTPKDITGKAAEKALESCGITVNKNTIPNEKRSPFVASGIRIGTPAVTTRGMKEEEMEEIAEMID 383          
BLAST of DY306112 vs. ExPASy Swiss-Prot
Match: GLYA_SYNAS (Serine hydroxymethyltransferase OS=Syntrophus aciditrophicus (strain SB) GN=glyA PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.412e-28
Identity = 62/126 (49.21%), Postives = 83/126 (65.87%), Query Frame = 2
Query:    2 PGLQGGPHNHTITGLSVALKQATTQEYKAYQEQVLNNCSKFAQTLLEMGYELVSGGTENHLLLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 376
            PG+QGGP  H I   +VA K+A T E+K YQ Q++ N    A+ L+  GY LVSGGT+NHLLL++L +KG+ G   ++ L++  I  NKN +P D    MV  GIR+GTPALTSRG  EE+   +A
Sbjct:  252 PGVQGGPLMHIIAAKAVAFKEALTDEFKDYQSQIVKNAQALAKELIGRGYRLVSGGTDNHLLLMDLTDKGLTGKEAQESLDSAGITVNKNGIPFDTRGPMVTSGIRIGTPALTSRGMKEEEMRTIA 377          
The following BLAST results are available for this feature:
BLAST of DY306112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYC_ENCCU2.613e-2837.91Serine hydroxymethyltransferase, cytosolic OS=Ence... [more]
GLYA_THEP12.613e-2847.69Serine hydroxymethyltransferase OS=Thermotoga petr... [more]
GLYA_THEMA2.613e-2847.69Serine hydroxymethyltransferase OS=Thermotoga mari... [more]
GLYA_EUBR32.613e-2849.21Serine hydroxymethyltransferase OS=Eubacterium rec... [more]
GLYA_ACIC12.613e-2838.38Serine hydroxymethyltransferase OS=Acidothermus ce... [more]
GLYA_XANCP3.412e-2847.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANCB3.412e-2847.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_XANC83.412e-2847.62Serine hydroxymethyltransferase OS=Xanthomonas cam... [more]
GLYA_THESQ3.412e-2847.69Serine hydroxymethyltransferase OS=Thermotoga sp. ... [more]
GLYA_SYNAS3.412e-2849.21Serine hydroxymethyltransferase OS=Syntrophus acid... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CE01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306112 ID=DY306112; Name=DY306112; organism=Citrus sinensis; type=EST; length=821bp
GCCTGGACTCCAAGGTGGCCCACACAACCACACAATTACTGGTTTATCAG
TTGCCTTGAAACAGGCCACTACTCAAGAGTATAAAGCCTATCAAGAGCAA
GTTCTGAACAATTGCTCAAAATTTGCACAGACTCTGCTCGAGATGGGCTA
TGAACTTGTTTCTGGTGGAACTGAGAACCATCTATTGTTGGTGAATTTGA
AAAACAAGGGAATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTT
CATATTGCAGCCAACAAAAACACTGTTCCTGGGGATGTGTCGGCCATGGT
TCCAGGTGGCATCAGGATGGGAACTCCGGCTCTTACTTCTAGGGGATTTG
TTGAGGAGGATTTTGCCAAGGTAGCATATTTCTTTGATGCTGCTGTGAAG
TTGGCTGTGAAGATCAAGTCTGAGACTCAAGGAACAAAGTTGAAAGATTT
CGTGGCCACAACACAGTCCGCTAACTTCCAATCCGAGATTGCGAAACTTC
GCCATGATGTTGAGGAGTATGCAAAGCAATTCCCCACAATTGGGTTTGAA
AAGGAAACCATGAAGTACAAGAACTGAGAGAAAAACGCCACTGTACTAGA
GTAGCGGAAGCCAGCCTGTATGAGCTTTTATTACACAGAGGCGACGAGGG
ATGACATGTAACTTACGATGATGAGCCATGTATCAACTATCGACCCTGTG
ATTTGGCGCTTTTATGAATACAATATACCGCAAAACCTTGATTTAGAATC
CAATTAATGTTTATAAAGTACTCTGTATTAACTGAGGCTTTCAGGGAGCA
AAATAACCTGCCATAAAACTA
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