DY306108

Overview
NameDY306108
Unique NameDY306108
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length846
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_NITWN (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dxs PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.704e-44
Identity = 89/177 (50.28%), Postives = 122/177 (68.93%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPL-KLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL+HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGRI+ +G ++A+L +G+ + +C  AA+ L +  +S T+ADARF KPLD DL  +LA EH++LIT+EEGS+GGFGSHV   L  +G LDG L ++RSM+LPD ++DH +P      +GL ++ I A V   LG+
Sbjct:  482 ELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKIALLSFGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLALKLAREHDVLITIEEGSIGGFGSHVMQTLMDNGALDGGLVRVRSMILPDEFLDHDTPTAMYARAGLDAKGIVAKVFEALGK 656          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 4.613e-44
Identity = 90/175 (51.43%), Postives = 119/175 (68.00%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 526
            EL+HMVATAA  D+ P  FR+PRG+G+G  +P   KG PL+IG+GR++ EG R+A+L +G+ + +  +AA  L ++ IS TVADARF KPLD DLI QLA  HE LIT+EEG++GGFGSHV   L  +G+ D   + RSMVLPD +IDH S       +GL++  I    L  LG
Sbjct:  457 ELVHMVATAAAHDEGPIAFRYPRGDGVGVEMPV--KGVPLQIGRGRVVSEGTRIALLSFGTRLAEVQVAAEALAARGISPTVADARFAKPLDRDLILQLAAHHEALITIEEGAIGGFGSHVAQLLAEAGVFDRGFRYRSMVLPDTFIDHNSAEVMYATAGLNAADIERKALETLG 629          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 1.028e-43
Identity = 92/176 (52.27%), Postives = 119/176 (67.61%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL HMV TA   D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LAA  L++  +S TVADARF KPLD DLIRQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  457 ELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLEAAGLSTTVADARFAKPLDHDLIRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.753e-43
Identity = 92/175 (52.57%), Postives = 117/175 (66.86%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 526
            EL HMVATAA  D  P  FR+PRG G G  +P   +   LEIGKGRI+ EG RVA+L +G+ + +   AA  L ++ I+ TVADARF KPLD D+I  LA +HE LIT+EEG+VGGFGSHV   L+   + D  LK RSMVLPD +ID  SP D  + + +++ HI A VL +LG
Sbjct:  461 ELKHMVATAAAYDAGPIAFRYPRGEGEGVEMPEQPE--VLEIGKGRIIEEGSRVALLSFGTRLGEVRKAAEALAARGITPTVADARFAKPLDRDMILSLAEKHEALITIEEGAVGGFGSHVAQLLSEEAVFDTGLKFRSMVLPDTFIDQASPKDMYDSAAMNAEHIEAKVLDVLG 633          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_NITHX (1-deoxy-D-xylulose-5-phosphate synthase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dxs PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.990e-43
Identity = 89/177 (50.28%), Postives = 119/177 (67.23%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILD-GPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL+HMVAT   I+DRPS  R+PRG G G  +P    G PL IGKGRI+ +G +VA+L  G+ + +C  AA+ L +  +S T+ADARF KPLD DL+ +LA +H++LIT+EEGS+GGFGSHV   L   G LD G +++R+MVLPD ++DH +P       GL  R I A V   LG+
Sbjct:  484 ELVHMVATQVAINDRPSAVRYPRGEGRGVEMP--EVGVPLPIGKGRIVRQGSKVALLSLGTRLAECEKAADELAAHGLSTTIADARFMKPLDVDLVLKLARDHDVLITIEEGSIGGFGSHVMQTLAEHGALDSGQVRVRAMVLPDEFLDHDTPNAMYASVGLDDRGIVAKVFEALGK 658          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.136e-42
Identity = 89/175 (50.86%), Postives = 119/175 (68.00%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 526
            EL HMV+TA  IDDRPS FR+PRG G+G  +P  +   PLEIGKGRI+ EG  VAI+  G+ + +C+ AA++L ++ +S TVADARF KPLD D++ +LA EHE +ITVEEG++GGFG+ V   L   G LD  LK+R++VLPD + D   P     ++GL +  I    LS LG
Sbjct:  455 ELAHMVSTAVAIDDRPSAFRYPRGEGLGLTIP--DLAAPLEIGKGRIVREGTSVAIVSLGTRLAECLKAADLLAARGLSATVADARFAKPLDVDMLLRLAREHEAIITVEEGAMGGFGAFVLQALATHGALDRGLKIRTLVLPDVFQDQDKPDLMYAQAGLDAEGILRGALSALG 627          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.938e-42
Identity = 92/175 (52.57%), Postives = 114/175 (65.14%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 526
            EL HMVATA   DD P  FRFPRG G G  +P    G  LEIGKGRI+ EG RVAIL +G+ + +   A   L ++ I+ T+ADARF KPLD ++I  L   HE LITVEEG++GGFGSHV   L+  G+ D   K RSMVLPD +ID  SPAD    +G+++  I   VLS+LG
Sbjct:  461 ELKHMVATAVAHDDGPIAFRFPRGEGNGVDMP--EVGEVLEIGKGRIITEGTRVAILSFGTRLAEVQKAGEALAARGITPTIADARFAKPLDREMILDLVANHEALITVEEGAIGGFGSHVAQLLSDEGVFDTGFKYRSMVLPDIFIDQSSPADMYAVAGMNAADIETKVLSVLG 633          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_RHILW (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=dxs PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 2.531e-42
Identity = 90/176 (51.14%), Postives = 116/176 (65.91%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL HMV TA   D  P  FR+PRG G+G  +P   +G  L IGKGRI+ EG +VA+L +G+ +  C+LAA  L +  +S TVADARF KPLD DLIRQ A  HE++ITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  457 ELKHMVRTAVAYDAGPISFRYPRGEGVGVDMPV--RGEILRIGKGRIVKEGTKVALLSFGTRLADCLLAAEDLDAAGLSTTVADARFAKPLDHDLIRQFARHHEMVITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALGR 630          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 3.306e-42
Identity = 89/176 (50.57%), Postives = 119/176 (67.61%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 529
            EL HMV TAA  D  P  FR+PRG G+G  +P   +G  L+IGKGRI+ EG +VA+L +G+ +  C+LA+  L++  +S TVADARF KPLD +L+RQLA  HE+LITVEEGSVGGFGS V  +L+  G+LD  LK+RS+V+PD +++   P      +GL    I +TV   L R
Sbjct:  457 ELKHMVRTAAAYDAGPISFRYPRGEGVGVDMPA--RGEILQIGKGRIVKEGTKVALLSFGTRLADCLLASEDLEAAGLSTTVADARFAKPLDHELLRQLARHHEMLITVEEGSVGGFGSQVMQYLSSEGLLDNGLKIRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFRALRR 630          
BLAST of DY306108 vs. ExPASy Swiss-Prot
Match: DXS_RHOCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodobacter capsulatus GN=dxs PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.619e-42
Identity = 89/183 (48.63%), Postives = 122/183 (66.67%), Query Frame = 2
Query:    2 ELMHMVATAAVIDDRPSCFRFPRGNGIGAVLPPNNKGTPLEIGKGRILMEGDRVAILGYGSVVQQCVLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 550
            EL HMV TAA  D  P   R+PRG G G  +P   +G  LEIGKGR++ EG  VAIL +G+ + Q + AA ML+++ +S TVADARFC+PLDTDLI +L   H  LIT+E+G++GGFG+ V H+L  +G L+    +R+M LPD YIDHGSP +    +GL++  I  T L+   RP +++ I
Sbjct:  458 ELCHMVVTAAAHDSGPIALRYPRGEGRGVEMP--ERGEVLEIGKGRVMTEGTEVAILSFGAHLAQALKAAEMLEAEGVSTTVADARFCRPLDTDLIDRLIEGHAALITLEQGAMGGFGAMVLHYLARTGQLEKGRAIRTMTLPDCYIDHGSPEEMYAWAGLTANDIRDTALA-AARPSKSVRI 637          
The following BLAST results are available for this feature:
BLAST of DY306108 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 454
Match NameE-valueIdentityDescription
DXS_NITWN2.704e-4450.281-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS2_RHOS44.613e-4451.431-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_RHIE61.028e-4352.271-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_SILST1.753e-4352.571-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_NITHX2.990e-4350.281-deoxy-D-xylulose-5-phosphate synthase OS=Nitroba... [more]
DXS_CAUSK1.136e-4250.861-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS2_ROSDO1.938e-4252.571-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS_RHILW2.531e-4251.141-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHIEC3.306e-4250.571-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHOCA9.619e-4248.631-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoba... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3CD07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306108 ID=DY306108; Name=DY306108; organism=Citrus sinensis; type=EST; length=846bp
GGAGCTAATGCACATGGTCGCTACAGCAGCAGTTATAGATGACAGGCCCA
GCTGTTTCAGATTTCCAAGGGGCAACGGAATTGGAGCAGTTCTCCCACCT
AATAACAAAGGAACTCCACTTGAGATTGGGAAGGGAAGAATCCTAATGGA
AGGCGATAGAGTGGCAATTTTGGGCTATGGTTCTGTAGTCCAACAATGTG
TGCTAGCTGCGAACATGCTTAAGAGCCAAGACATTTCCGTGACAGTGGCT
GATGCAAGATTTTGCAAACCTTTGGATACAGACCTCATTAGACAGTTGGC
CAATGAGCATGAAATCCTAATTACTGTGGAAGAGGGTTCTGTGGGAGGCT
TTGGCTCTCATGTATGTCACTTTCTAACCTTAAGTGGCATTCTGGATGGA
CCTCTCAAGTTGAGATCAATGGTGCTTCCTGATAGATACATTGACCATGG
ATCACCAGCCGATCAGCTTGAAGAATCAGGGCTCTCCTCAAGGCATATCT
CTGCAACAGTCTTATCTCTCTTAGGGAGGCCAAAAGAAGCCCTTCTGATT
TAAGTAATCATACAAAATCAAACAACATCTTGCCCTTCGGATCCAACTTA
CAATTCCAAGTTGGGGGTGTTATACACTATAAGGTCCAACTCTTAGAATC
TTTACCTTCATATCCCCTGTAACCATGAAGCATTACCGTGGGATTATAAA
TGTAATGGTCAAGCCTTTTGTTGTTTCTGTACATTCACAATTTTTTCTTG
TAATAAAGATACAAGGCATTGATCTTCACTGTAGATTAACTCCCCTGTCT
TCCACCTGTTTTGTTCCAGTTAAGTTAAATTTCTTTCTTAAAAAAA
back to top