DY306104

Overview
NameDY306104
Unique NameDY306104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_PAPAN (RAG1-activating protein 1 OS=Papio anubis GN=RAG1AP1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.586e-12
Identity = 45/184 (24.46%), Postives = 95/184 (51.63%), Query Frame = 1
Query:   19 HIVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPP--MMRGRTAVLAGVCDVVFPGTTVLVTQIFFDRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMYWK 564
            H+   RS +  + +P+++  +N   W+ YG +K + +L+  VN  GAAL+ +Y++ +L + P   ++  +TA L GV  + +    +LV     + + ++++ G     F++  Y SPL+ +  V+ TKS + + + L+    +  A W +Y    +  +I + N  G +      + + ++WK
Sbjct:   32 HMRMTRSVDNVQFLPFLTTEVNNLGWLSYGALKGDRILIV-VNTVGAALQTLYILAYLHYCPRKRVVLLQTATLLGVLLLGYGYFWLLVP----NPEARLQLLGLFCSVFTISMYLSPLADLAKVIQTKSTQCLSYPLTIATVLTSASWCLYGFRLRVPYIMVSNFPGIV---TSFIRFWLFWK 207          
BLAST of DY306104 vs. ExPASy Swiss-Prot
Match: R1AP1_XENTR (RAG1-activating protein 1 homolog OS=Xenopus tropicalis GN=rag1ap1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.377e-12
Identity = 43/184 (23.37%), Postives = 89/184 (48.37%), Query Frame = 1
Query:   22 IVQRRSTEEFESIPYISKLLNAYFWVWYGIVKPNSVLVASVNGFGAALEIIYVIIFLIFAPPMMRGRTAVLAGVCDVVFPGTTVLVTQIFF-----DRDVQIKVSGFLSLCFSMVAYSSPLSAMKTVVVTKSVEYMPFLLSFILFINGAVWTVYAVLTKDLFIGIPNGSGFIPGAAQLVLYVMY 558
            +V +RS E  + +P+++  LN   W +YG +K +  L+  VN  GA+L+ +Y+  +++++       + VL  +         + +   +F     D + ++   G     F++  Y SPL+ +  ++ +KS + + F L+   F+    W +Y  +  DL+I +PN  G +    +  L+  Y
Sbjct:   29 MVAKRSVENIQFLPFLTTDLNNLGWFYYGYLKGDGTLII-VNLIGASLQTLYMAAYILYSLERRYVVSQVLVSL-------GVLFLAHCYFTLWTPDINSRLNQLGLFCSIFTISMYLSPLADLAQIIKSKSTKCLSFPLTVATFLTSTSWVLYGWVQSDLYITVPNFPGIVTSLLRFWLFSRY 204          
The following BLAST results are available for this feature:
BLAST of DY306104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
R1AP1_PAPAN2.586e-1224.46RAG1-activating protein 1 OS=Papio anubis GN=RAG1A... [more]
R1AP1_XENTR3.377e-1223.37RAG1-activating protein 1 homolog OS=Xenopus tropi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CD01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306104 ID=DY306104; Name=DY306104; organism=Citrus sinensis; type=EST; length=966bp
CCTGCGAAAACGTTTTGGCACATAGTACAGCGTAGATCAACGGAGGAATT
TGAGAGCATTCCTTATATAAGCAAATTACTGAATGCATACTTTTGGGTTT
GGTATGGAATTGTGAAGCCCAACAGTGTGCTTGTGGCCTCTGTTAATGGT
TTTGGAGCCGCCCTGGAGATTATTTATGTCATTATATTTCTCATTTTTGC
TCCTCCGATGATGAGGGGTAGAACTGCCGTACTTGCCGGTGTTTGCGATG
TGGTGTTTCCCGGCACAACAGTGTTGGTGACTCAAATATTTTTCGACAGG
GATGTGCAAATCAAGGTCTCAGGTTTCTTGTCTTTGTGTTTCAGCATGGT
CGCCTATAGTTCACCTCTTTCAGCCATGAAAACAGTGGTGGTGACAAAGA
GTGTGGAGTACATGCCATTTCTTCTCTCATTTATCCTATTCATAAATGGG
GCAGTTTGGACAGTCTATGCTGTGCTCACAAAAGACCTTTTCATTGGAAT
ACCAAATGGGAGTGGATTTATTCCTGGCGCCGCTCAATTAGTGCTTTATG
TGATGTATTGGAAGCCAAAGTCATCGTCAAAGAAAATTCAGATGATGCTT
TGGAGGAAGGGAGGGCAACTGACCGCCTTAATTCGGCTGAAAATCGTGAA
AAACGTGAAGGCTAAATAAATAAATTAATAAAACTCTTTTAATTAAAAAA
TTGAAAAGTTAAGGGGGCCTTAACCCATTGGTGCCAAAAATTGCCAATAA
TTTCCCCCCATTTTGGTGCCCTTGAAAGGAAAATTTCCCCTTTCCAAAAT
AAATTTTTGGAAACCAAAGAAAAAAAAATGGGATTTTGCCCGGGGGGTAA
AAATTTTTTTAATTAATTTAAATTAACAAAAAACCCCTTTTTTTATTTCT
GTTTGGGCGCCCTTATAGGCCCCTAAAAATACAAAAGGGGGCCGCGAAAA
AATTTCTTTTTTTTCC
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