DY306092

Overview
NameDY306092
Unique NameDY306092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1164
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_ERWT9 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ribB PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 3.024e-21
Identity = 54/133 (40.60%), Postives = 75/133 (56.39%), Query Frame = 3
Query:  537 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            +  AIE +R G+               +I AA+  T E MA  ++HG+GIVC+ +  E LE+LDLP+MV  + N     T FTVT++A  G T GVSA DR  T+    + D++P D NR G +FPL+   GG
Sbjct:   16 VTHAIEALRAGRGVMVLDDEDRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLNEERLEQLDLPMMV--QNNTSAYGTGFTVTIEAAEGVTTGVSATDRLTTIRAAIADDARPSDLNRPGHVFPLRARSGG 146          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_ENTS8 (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=ribB PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.950e-21
Identity = 53/136 (38.97%), Postives = 77/136 (56.62%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            F  +  AI  +R+G+               +I AA+  T E MA  ++HG+GIVC+ +  E  ++LDLP+MV  + N     T FTVT++A HG T GVSA DR  T+    + D+KP D +R G +FPL+ + GG
Sbjct:   13 FERVENAIAALREGRGVMVLDDENRENEGDMIFAAETMTVEQMALTIRHGSGIVCLCLTEERRKQLDLPMMV--ENNTSAFGTGFTVTIEAAHGVTTGVSAADRITTIRAAIADDAKPSDLHRPGHVFPLRAQPGG 146          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGL (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum GN=ribBA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.950e-21
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  534 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            S+ EAI DI  GK               +I AA+LATPE +AF+V++ +G +C  +  +D +RLDLP M A   N +   TA+TVTVDA  GTT G+SA DRA+T+  LA  ++   DF R G + PL+  +GG
Sbjct:   13 SVEEAIADIAAGKAVVVVDDEDRENEGDIIFAAELATPELVAFMVRYSSGYICAPLTAKDADRLDLPPMTA--HNQDARGTAYTVTVDANTGTT-GISATDRAHTLRLLADPEADRTDFTRPGHVVPLRAREGG 143          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_CORGB (Riboflavin biosynthesis protein ribBA OS=Corynebacterium glutamicum (strain R) GN=ribBA PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 3.950e-21
Identity = 58/134 (43.28%), Postives = 80/134 (59.70%), Query Frame = 3
Query:  534 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            S+ EAI DI  GK               +I AA+LATPE +AF+V++ +G +C  +  +D +RLDLP M A   N +   TA+TVTVDA  GTT G+SA DRA+T+  LA  ++   DF R G + PL+  +GG
Sbjct:   13 SVEEAIADIAAGKAVVVVDDEDRENEGDIIFAAELATPELVAFMVRYSSGYICAPLTAKDADRLDLPPMTA--HNQDARGTAYTVTVDANTGTT-GISATDRAHTLRLLADPEADRTDFTRPGHVVPLRAREGG 143          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_PROMH (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Proteus mirabilis (strain HI4320) GN=ribB PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 5.159e-21
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  537 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            +  A+E +R GK               ++  A+  T E MA  ++HG+GIVCV +  E  ++LDLP+MV  + N     TAFTVT++A  G T GVSA DR  TV   A+ ++KP D NR G +FPL+ + GG
Sbjct:   16 VERALEALRAGKGVMVLDDENRENEGDMVFVAETMTTEQMAMSIRHGSGIVCVCITEERRQQLDLPMMV--ENNTSHFHTAFTVTIEAAQGVTTGVSAADRLTTVRAAAADNAKPSDLNRPGHVFPLRAQPGG 146          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_RHOSR (Riboflavin biosynthesis protein ribBA OS=Rhodococcus sp. (strain RHA1) GN=ribBA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 6.737e-21
Identity = 59/136 (43.38%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            F SI  A+ DI  GK               LI AA+ ATPE +AF+V++ +G +CV + G D +RL LP M A   N +K  TA+TVTVDA+ G   G+SA DRA T+  LA   S   DF R G + PL+ ++GG
Sbjct:    4 FDSIERAVADIAAGKAVVVVDDEDRENEGDLIFAAEKATPELVAFMVRYTSGYLCVPLDGADCDRLGLPPMYAT--NQDKHGTAYTVTVDAREGIGTGISASDRAATMRLLADPSSGAQDFTRPGHVVPLRAKEGG 137          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_UNCTG (Riboflavin biosynthesis protein ribBA OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=ribBA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.149e-20
Identity = 58/136 (42.65%), Postives = 85/136 (62.50%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            F+SI +A++DI+ G+               LI AA+ A+PE + F+ K+  G++CV MK E L+ L++  MV +K  ++K C+ FTV+VD K GTT G+SA DR+ TV  L  K +K  DF R G IFPL+ ++GG
Sbjct:    6 FASIGDAVKDIKVGRMVIVVDDPGRENEGDLICAAEKASPEVINFMTKYARGLICVPMKHERLKELEIENMV-EKPTEKKGCS-FTVSVDYKIGTTTGISAYDRSVTVRKLIDKTAKHEDFARPGHIFPLRCKEGG 139          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_CHLTR (Riboflavin biosynthesis protein ribBA OS=Chlamydia trachomatis GN=ribBA PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.149e-20
Identity = 57/137 (41.61%), Postives = 77/137 (56.20%), Query Frame = 3
Query:  525 GFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            G +S+ +AI+D+ +GKF              LI+A +  + E M+F++ H TGIVC S+  E  + LDLP MV  ++N     TAFTV+VDA  G T GVSA DR  TV  LA   +    F R G +FPL  + GG
Sbjct:    7 GIASVQQAIKDVAEGKFVIVIDAASRENEGDLILAGEKVSTEKMSFLLSHTTGIVCASLSREQAKSLDLPAMV--QDNQCAFKTAFTVSVDASSGVTTGVSASDRTRTVQLLADPAATAESFVRPGHVFPLISQPGG 141          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIB3_MAGGR (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Magnaporthe grisea GN=RIB3 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.149e-20
Identity = 56/141 (39.72%), Postives = 79/141 (56.03%), Query Frame = 3
Query:  516 PTEGFSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKH-GTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            P   F +IP+ I+  + G+F              LI+AA+  T E MAF+V+H +G++C  +  E    LDLP MV    N +   TA+TV+VDA+H  TT G+SA DRA     LA+ D++P  F R G +FPL+   GG
Sbjct:    8 PKSNFDAIPDVIQAFKNGEFVVVLDDPSRENEADLIIAAESVTTEQMAFMVRHSSGLICAPLTPERTTALDLPQMVT--HNADPRGTAYTVSVDAEHPSTTTGISAHDRALACRMLAAPDAQPSHFRRPGHVFPLRAVAGG 146          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_PSEAE (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Pseudomonas aeruginosa GN=ribB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.501e-20
Identity = 62/145 (42.76%), Postives = 79/145 (54.48%), Query Frame = 3
Query:  531 SSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGGNSGKELGPTE 965
            ++I E IEDIRQGK               LIMAA+    E + F+VKH  G+VC+ M  E  ERL LPLMV  + N     T FTV+++A  G T G+SA DRA TV   A+K++   D    G IFPL  + GG   +  G TE
Sbjct:    4 NTIDELIEDIRQGKMVILMDDEDRENEGDLIMAAECVRTEDINFMVKHARGLVCMPMTRERCERLGLPLMV--QRNGSGFGTKFTVSIEAAEGVTTGISAADRARTVQAAAAKNAVAADIVSPGHIFPLMAQPGGTLAR-AGHTE 145          
The following BLAST results are available for this feature:
BLAST of DY306092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
RIBB_ERWT93.024e-2140.603,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBB_ENTS83.950e-2138.973,4-dihydroxy-2-butanone 4-phosphate synthase OS=E... [more]
RIBBA_CORGL3.950e-2143.28Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBBA_CORGB3.950e-2143.28Riboflavin biosynthesis protein ribBA OS=Corynebac... [more]
RIBB_PROMH5.159e-2140.603,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]
RIBBA_RHOSR6.737e-2143.38Riboflavin biosynthesis protein ribBA OS=Rhodococc... [more]
RIBBA_UNCTG1.149e-2042.65Riboflavin biosynthesis protein ribBA OS=Unculture... [more]
RIBBA_CHLTR1.149e-2041.61Riboflavin biosynthesis protein ribBA OS=Chlamydia... [more]
RIB3_MAGGR1.149e-2039.723,4-dihydroxy-2-butanone 4-phosphate synthase OS=M... [more]
RIBB_PSEAE1.501e-2042.763,4-dihydroxy-2-butanone 4-phosphate synthase OS=P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3CB12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306092 ID=DY306092; Name=DY306092; organism=Citrus sinensis; type=EST; length=1164bp
CACAAACAGCGAAGACTCATTCAGCTTTGTTGTTGTTAGAAGAGAGATAG
AGATTACTGGAGAGAAAGAGAGAGAGAGAGAGGCTTAAACCCATAACAAA
TACAAGGGGAAAATAATTAATGGCGGCGTCTCTCAACATATCTTCTCCTT
CAACTTCAGCTCTCTCTTCTCCTCCAGCACGCAGAAATGTGAATTTTGTT
AGTGGATTTCCCAGTACGAAGTCACTTTTGGCAAATGGGCACTCTTCATA
TTTGGCCTTTGTAAAGCTAGCTACTAAATCATCCATTAGTATCAAGGGTG
TCGGCAAAACTAGAGCTACACTGATATCTGGAGAAGGTGACCTTTTAGCT
TATCCCAATGGCAATAACCTTGTGGCCGAAAGTACTGGTGCTGATGATCA
ATTGGTGGGGATTGAGTTACAACCGGATGCAATAGCATTTGGAGCACTTG
CAGCAGATACCGCTCCCACAACTTTTGGATTTTCCAGTGATGATGATGAA
TTTGATTTGGATAGCCCTACAGAAGGTTTTTCTTCTATCCCCGAGGCCAT
TGAAGACATTCGCCAAGGAAAGTTTGTCGTGGTCGTGGATGATGAAGATA
GAGAAAATGAGGGAGATCTTATAATGGCAGCACAGCTCGCAACACCTGAA
GCTATGGCATTTATTGTAAAACATGGAACTGGAATTGTTTGCGTGAGCAT
GAAGGGGGAAGATCTGGAGAGGCTGGATCTTCCTTTAATGGTTGCACAAA
AGGAAAATGATGAGAAACTTTGTACTGCATTCACAGTGACAGTGGATGCA
AAACATGGAACAACCCCAGGGGTCTCAGCTCGTGATAGGGCCAACACTGT
TTTGACTCTTGCTTCTAAGGATTCAAAACCTGGGGATTTCAATCGCCGGG
GGCCTATTTTTCCTCTGAAGTACGAAAAGGGGGGGAATTCCGGAAAAGAG
CTGGGTCCTACCGAAACCTTCCGGTGGATCTTGGTGGTGCTTACTGGGGA
TTTGCCCCGGCGACAATTTTTGGTGTGAGGGTGGGGGAAGGAGAAGGGGT
TCCCGGGGCTAAAATTACCAAAACCTTCTCGGGATTTTTCCTAAAAGGGG
GAAAAATTTTAAAATTTATTTTTTCCTTTGTGTCGTGTTTTTTAAAAGGG
GGGTTAGGGGAAGG
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