DY306092

Overview
NameDY306092
Unique NameDY306092
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1164
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_ACTPJ (Riboflavin biosynthesis protein ribBA OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=ribBA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.042e-13
Identity = 48/136 (35.29%), Postives = 74/136 (54.41%), Query Frame = 3
Query:  528 FSSIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            FS + +AIE IRQGK                I AA+ ATPE + F+  +G G++C  +  E  ++L+   MVA  +++ +  TAFTV+VD    T  G+SA +R+ T + +   ++K  DF   G +FPL  + GG
Sbjct:    6 FSKVEDAIEAIRQGKIILVTDDEDRENEGDFICAAEFATPENINFMATYGKGLICTPISTEIAKKLNFHPMVAVNQDNHE--TAFTVSVD-HIDTGTGISAFERSITAMKIVDDNAKATDFRCPGHMFPLIAKDGG 138          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_VIBFI (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Vibrio fischeri GN=ribB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.959e-13
Identity = 42/133 (31.58%), Postives = 70/133 (52.63%), Query Frame = 3
Query:  537 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            + +AI+ ++QG                LI +    T E MA +++  +GIVC+ +  +  + L+L  MV   E+  +  TAFT++++AK G T GVSA DR  T+ T     + P +  + G +FPL+ + GG
Sbjct:   19 VEQAIKSVQQGNGVLLLDDESRENEGDLIYSVDHLTSEQMALMIRSCSGIVCLCLTEDKADYLELSPMVEHNESVNQ--TAFTISIEAKKGVTTGVSATDRVTTIKTACKNGALPHELAKPGHVFPLRAKDGG 149          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBBA_PROVI (Riboflavin biosynthesis protein ribBA OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=ribBA PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.753e-13
Identity = 49/135 (36.30%), Postives = 67/135 (49.63%), Query Frame = 3
Query:  534 SIPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDA-KHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            +I  A+EDI QGK                I AA   T E + FI K   G++CV++  +  + L L  MV +  +  +  T FTV+VDA   G T G+S  DRA T+  L  + S    F+R G IFPL+   GG
Sbjct:    8 TIESALEDIGQGKLVIVIDDEERENEGDFIAAADKVTTEMINFITKEARGLLCVAVTMDRAKELQLEPMVQRNTSQHE--TNFTVSVDAIAEGVTTGISVYDRAMTIKMLGDETSHADSFSRPGHIFPLRAMDGG 140          
BLAST of DY306092 vs. ExPASy Swiss-Prot
Match: RIBB_RALEJ (3,4-dihydroxy-2-butanone 4-phosphate synthase OS=Ralstonia eutropha (strain JMP134) GN=ribB PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.566e-12
Identity = 44/133 (33.08%), Postives = 71/133 (53.38%), Query Frame = 3
Query:  537 IPEAIEDIRQGKFXXXXXXXXXXXXXXLIMAAQLATPEAMAFIVKHGTGIVCVSMKGEDLERLDLPLMVAQKENDEKLCTAFTVTVDAKHGTTPGVSARDRANTVLTLASKDSKPGDFNRRGPIFPLKYEKGG 935
            I +A++ +R+G+               LI+AA+  TP  MA +++  +GIVC+ +  + + +L L  MV  + N  +  TAFTV+++A+ G T GVSA DR  T+    +KD+        G +FPL    GG
Sbjct:   26 IAQALDAMREGRPVVLLDDDDRENEADLILAAECLTPSNMAMMIRECSGIVCLCLTTDKVRQLGLRPMV--ENNRSQYGTAFTVSIEAREGVTTGVSAVDRITTIRAAIAKDAGTDAVVSPGHVFPLVAVDGG 156          
The following BLAST results are available for this feature:
BLAST of DY306092 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 224
Match NameE-valueIdentityDescription
RIBBA_ACTPJ1.042e-1335.29Riboflavin biosynthesis protein ribBA OS=Actinobac... [more]
RIBB_VIBFI3.959e-1331.583,4-dihydroxy-2-butanone 4-phosphate synthase OS=V... [more]
RIBBA_PROVI6.753e-1336.30Riboflavin biosynthesis protein ribBA OS=Prostheco... [more]
RIBB_RALEJ2.566e-1233.083,4-dihydroxy-2-butanone 4-phosphate synthase OS=R... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM3CB12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306092 ID=DY306092; Name=DY306092; organism=Citrus sinensis; type=EST; length=1164bp
CACAAACAGCGAAGACTCATTCAGCTTTGTTGTTGTTAGAAGAGAGATAG
AGATTACTGGAGAGAAAGAGAGAGAGAGAGAGGCTTAAACCCATAACAAA
TACAAGGGGAAAATAATTAATGGCGGCGTCTCTCAACATATCTTCTCCTT
CAACTTCAGCTCTCTCTTCTCCTCCAGCACGCAGAAATGTGAATTTTGTT
AGTGGATTTCCCAGTACGAAGTCACTTTTGGCAAATGGGCACTCTTCATA
TTTGGCCTTTGTAAAGCTAGCTACTAAATCATCCATTAGTATCAAGGGTG
TCGGCAAAACTAGAGCTACACTGATATCTGGAGAAGGTGACCTTTTAGCT
TATCCCAATGGCAATAACCTTGTGGCCGAAAGTACTGGTGCTGATGATCA
ATTGGTGGGGATTGAGTTACAACCGGATGCAATAGCATTTGGAGCACTTG
CAGCAGATACCGCTCCCACAACTTTTGGATTTTCCAGTGATGATGATGAA
TTTGATTTGGATAGCCCTACAGAAGGTTTTTCTTCTATCCCCGAGGCCAT
TGAAGACATTCGCCAAGGAAAGTTTGTCGTGGTCGTGGATGATGAAGATA
GAGAAAATGAGGGAGATCTTATAATGGCAGCACAGCTCGCAACACCTGAA
GCTATGGCATTTATTGTAAAACATGGAACTGGAATTGTTTGCGTGAGCAT
GAAGGGGGAAGATCTGGAGAGGCTGGATCTTCCTTTAATGGTTGCACAAA
AGGAAAATGATGAGAAACTTTGTACTGCATTCACAGTGACAGTGGATGCA
AAACATGGAACAACCCCAGGGGTCTCAGCTCGTGATAGGGCCAACACTGT
TTTGACTCTTGCTTCTAAGGATTCAAAACCTGGGGATTTCAATCGCCGGG
GGCCTATTTTTCCTCTGAAGTACGAAAAGGGGGGGAATTCCGGAAAAGAG
CTGGGTCCTACCGAAACCTTCCGGTGGATCTTGGTGGTGCTTACTGGGGA
TTTGCCCCGGCGACAATTTTTGGTGTGAGGGTGGGGGAAGGAGAAGGGGT
TCCCGGGGCTAAAATTACCAAAACCTTCTCGGGATTTTTCCTAAAAGGGG
GAAAAATTTTAAAATTTATTTTTTCCTTTGTGTCGTGTTTTTTAAAAGGG
GGGTTAGGGGAAGG
back to top