EY702743

Overview
NameEY702743
Unique NameEY702743
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UBP3_ARATH (Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabidopsis thaliana GN=UBP3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 66/197 (33.50%), Postives = 90/197 (45.69%), Query Frame = 2
Query:  137 DIFGGQLKSVVKA-QGNKASATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENLEGYRTSSTGNA-GVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGDSKVL------------HDQAYVLFY 679
            +IF G L +  +  +    +A  + FL L LDI  E   +I   L+ FS+ E L             +  A+K +KI+    IL++HL RF Y  Q     KL   V FPL+L L     V P A+  +Y L A V H G  P+ GHY +  +  N  WL FDD +V  I +S V              D  Y+LFY
Sbjct:  174 NIFQGILTNETRCLRCETVTARDETFLDLSLDI--EQNSSITSCLKNFSSTETLHAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSN--TVEPYAD-VEYSLFAVVVHVGSGPNHGHYVSLVKSHN-HWLFFDDENVEMIEESAVQTFFGSSQEYSSNTDHGYILFY 364          
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UBP12_HUMAN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo sapiens GN=USP12 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 67/202 (33.17%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  122 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI------------GDSKVLHDQAYVLFY 679
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I             D     +  Y+LFY
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFY 366          
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UBP12_BOVIN (Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos taurus GN=USP12 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 67/202 (33.17%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  122 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI------------GDSKVLHDQAYVLFY 679
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I             D     +  Y+LFY
Sbjct:  168 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFY 365          
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UB12B_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xenopus laevis GN=usp12-B PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 67/202 (33.17%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  122 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI------------GDSKVLHDQAYVLFY 679
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I             D     +  Y+LFY
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFY 366          
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UB12A_XENLA (Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xenopus laevis GN=usp12-A PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 67/202 (33.17%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  122 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI------------GDSKVLHDQAYVLFY 679
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I             D     +  Y+LFY
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPMILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFY 366          
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UBP8_ARATH (Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 43/116 (37.07%), Postives = 56/116 (48.28%), Query Frame = 2
Query:  341 AKKSVKIQTLSKILILHLMRFSYGSQGSTKLHKSVRFPLQ-LVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAIGDSKVLHDQAYVLFYNK 685
            A K + +  L +IL++HL RFSY      KL   V FPL  L L   +         +Y L A   H+G     GHYTA   +  D+W  FDD+ V  I   K+    AYVLFY +
Sbjct:  754 AIKKLDLWRLPEILVIHLKRFSYSRFMKNKLEAYVDFPLDNLDLSSYISYKNGQTTYRYMLYAISNHYG-SMGGGHYTAYVHHGGDRWYDFDDSHVHQISQEKIKTSAAYVLFYKR 868          
BLAST of EY702743 vs. ExPASy Swiss-Prot
Match: UBP12_MOUSE (Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus musculus GN=Usp12 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.375e-11
Identity = 67/202 (33.17%), Postives = 92/202 (45.54%), Query Frame = 2
Query:  122 PSALSDIFGGQLKSVVKAQGNKA-SATVQPFLLLHLDIYSEAVHTIEDALRLFSAPENL-EGYRTSSTGNAGVVTAKKSVKIQTLSKILILHLMRFSYGSQ--GSTKLHKSVRFPLQLVLGRDLLVTPSAEGRKYELVATVTHHGRDPSKGHYTADARYFNDQWLHFDDASVTAI------------GDSKVLHDQAYVLFY 679
            P+ + +IF G L +  +    +  S+  + FL L +D+  E   +I   LR FS  E L   Y+           A K +K++ L  IL LHL RF Y  Q    TKL   V FPL+L L        + + R Y+LVA V H G  P++GHY A  +  +D WL FDD  V  I             D     +  Y+LFY
Sbjct:  169 PTWVHEIFQGTLTNETRCLTCETISSKDEDFLDLSVDV--EQNTSITHCLRGFSNTETLCSEYKYYCEECRSKQEAHKRMKVKKLPLILALHLKRFKYMDQLHRYTKLSYRVVFPLELRLFNTSGDATNPD-RMYDLVAVVVHCGSGPNRGHYIAIVK-SHDFWLLFDDDIVEKIDAQAIEEFYGLTSDISKNSESGYILFY 366          
The following BLAST results are available for this feature:
BLAST of EY702743 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 97
Match NameE-valueIdentityDescription
UBP3_ARATH5.647e-1133.50Ubiquitin carboxyl-terminal hydrolase 3 OS=Arabido... [more]
UBP12_HUMAN5.647e-1133.17Ubiquitin carboxyl-terminal hydrolase 12 OS=Homo s... [more]
UBP12_BOVIN5.647e-1133.17Ubiquitin carboxyl-terminal hydrolase 12 OS=Bos ta... [more]
UB12B_XENLA5.647e-1133.17Ubiquitin carboxyl-terminal hydrolase 12-B OS=Xeno... [more]
UB12A_XENLA5.647e-1133.17Ubiquitin carboxyl-terminal hydrolase 12-A OS=Xeno... [more]
UBP8_ARATH7.375e-1137.07Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabido... [more]
UBP12_MOUSE7.375e-1133.17Ubiquitin carboxyl-terminal hydrolase 12 OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-G04-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702743 ID=EY702743; Name=EY702743; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGCTAGTATTAACGGAGCCAATACAGCTCTAGTCTCTTTGG
CAGAAGAAGATGAATGGGAAACAGTTGGCCCAAAGAACAAATCTGCAGTG
ACAAGAACACAGAGCTTCCTGCCTTCAGCACTTAGTGATATATTTGGAGG
ACAGCTGAAAAGCGTGGTGAAGGCACAAGGAAATAAAGCTTCTGCAACTG
TTCAGCCATTTCTCTTGCTCCACCTTGATATTTACTCTGAAGCTGTGCAT
ACAATTGAGGATGCTCTTCGTCTGTTTTCTGCTCCAGAAAATCTTGAGGG
ATACCGTACATCATCTACTGGAAATGCTGGTGTTGTGACTGCCAAAAAAT
CTGTCAAGATACAGACGCTTTCAAAGATTTTGATTTTACACCTGATGCGT
TTTAGTTATGGAAGCCAAGGGAGCACAAAGTTGCATAAATCTGTCCGTTT
TCCTCTTCAATTGGTTTTGGGTCGGGATCTGCTTGTTACTCCATCTGCTG
AGGGTCGAAAATATGAACTTGTTGCCACAGTTACCCACCATGGAAGAGAT
CCCTCGAAGGGGCATTATACTGCTGATGCTCGGTATTTTAATGACCAGTG
GCTCCATTTTGACGATGCCTCTGTGACTGCTATTGGGGACAGTAAGGTAT
TGCATGACCAGGCATACGTCCTTTTCTACAACAAGTTTAGAAAGGTGCAG
GATTNATAGTTTTCATGGGAGAAAAGAGCCATATCTGATGGATTCACCCC
ATGACAGTAGCTGAACTGTTTTTCTTAATTTTGAAGTAGTTTTTAAAATG
GTGGTATTGCATATGAAGGATATAACATTTTACTGATGGATATGAAAATG
AAATGAGTGGAAGTCCTGATAAAGTAATTAATGGAAACTCAATT
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