DY306053

Overview
NameDY306053
Unique NameDY306053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1111
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3_HUMAN (Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.258e-26
Identity = 78/236 (33.05%), Postives = 118/236 (50.00%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKF----------------------ESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAK--YKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL------PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+FR FY  K   R+LT  + +G+ +L   F                       +R   L V+T+Q + L+LFN+ ++ ++ EI  + ++ + ++VR L SL+C K   ++L KEP +K I     F  N +FT K+ R+KI                        R++ I+A+IVRIMKSRK + H  LV E  +QL   F P    IKKRIE LI R+YL R   +  ++ Y+A
Sbjct:  533 EIFRRFYLAKHSGRQLTLQHHMGSADLNATFYGPVKKEDGSEVGVGGAQVTGSNTRKHILQVSTFQMTILMLFNNREKYTFEEIQQETDIPERELVRALQSLACGKPTQRVLTKEPKSKEIENGHIFTVNDQFTSKLHRVKIQTVAAKQGESDPERKETRQKVDDDRKHEIEAAIVRIMKSRKKMQHNVLVAEVTQQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 768          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL4_SCHPO (Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.049e-23
Identity = 67/206 (32.52%), Postives = 106/206 (51.46%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNS---SDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIP----LPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSN 597
            ++ F +FY +K   +K++W  SLG C +  +F     EL ++ +QA  LL FN+    + +SY ++     LSD D+ R L SLSCA+ + L   P +K  SP   F  N KFTDK+ R+KI                      R++ + ASIVR+MK ++ + H  LV   +  +     P    +K  IE L+ ++YLER+ ++
Sbjct:  523 LDCFEKFYLSKQVGKKISWYASLGHCIVKARFPLGNKELSISLFQACVLLQFNNCLGGEGISYQDLKKSTELSDIDLTRTLQSLSCARIRPLVMVPKSKKPSPDTMFYVNEKFTDKLYRVKINQIYLKEERQENSDVQEQVVRDRQFELQASIVRVMKQKEKMKHDDLVQYVINNVKDRGIPLVSDVKTAIEKLLEKEYLEREDND 728          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL2_PONAB (Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 3.985e-23
Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            V++F  FY      RKLTW++ L T  +   +  +    +VTTYQ + LL FN+S+ +SY E+     +++ ++ + + SL     K++N +   + I     F  N  F+ K  + KI                      R+  + A+IVRIMK+RKVL H  L+ E + Q    F P    IKK IE LI + Y+ER +++ + + Y+A
Sbjct:  537 VQMFELFYSQHFSGRKLTWLHYLCTGEVKMNYLGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSL--LDVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL2_MOUSE (Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.985e-23
Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            V++F  FY      RKLTW++ L T  +   +  +    +VTTYQ + LL FN+S+ +SY E+     +++ ++ + + SL     K++N +   + I     F  N  F+ K  + KI                      R+  + A+IVRIMK+RKVL H  L+ E + Q    F P    IKK IE LI + Y+ER +++ + + Y+A
Sbjct:  537 VQMFELFYSQHFSGRKLTWLHYLCTGEVKMNYLGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSL--LDVKMINHDSEKEDIDAESSFSLNMSFSSKRTKFKITTSMQKDTPQELEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL2_HUMAN (Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 3.985e-23
Identity = 65/211 (30.81%), Postives = 105/211 (49.76%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            V++F  FY      RKLTW++ L T  +   +  +    +VTTYQ + LL FN+S+ +SY E+     +++ ++ + + SL     K++N +   + I     F  N  F+ K  + KI                      R+  + A+IVRIMK+RKVL H  L+ E + Q    F P    IKK IE LI + Y+ER +++ + + Y+A
Sbjct:  537 VQMFELFYSQHFSGRKLTWLHYLCTGEVKMNYLGKPYVAMVTTYQMAVLLAFNNSETVSYKELQDSTQMNEKELTKTIKSL--LDVKMINHDSEKEDIDAESSFSLNMNFSSKRTKFKITTSMQKDTPQEMEQTRSAVDEDRKMYLQAAIVRIMKARKVLRHNALIQEVISQSRARFNPSISMIKKCIEVLIDKQYIERSQASADEYSYVA 745          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_DROME (Cullin homolog 1 OS=Drosophila melanogaster GN=lin19 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 6.362e-21
Identity = 68/214 (31.78%), Postives = 101/214 (47.20%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLL---GKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            V  F EFY  +   RKL W+Y +    L+    +  S T  L  +T+Q S LL FN     +  ++        ++++++L  L   K K+L    N  +++P    E    + +K RRI I  P                   R+  I A+IVRIMK RK L H  L+ E + QL   FKP    IKK I+ LI ++YLER + + + + YLA
Sbjct:  563 VRQFNEFYAARHSGRKLNWLYQMCKGELIMNVNRNNSSTYTLQASTFQMSVLLQFNDQLSFTVQQLQDNTQTQQENLIQVLQIL--LKAKVLTSSDNENSLTPESTVELFLDYKNKKRRININQPLKTELKVEQETVHKHIEEDRKLLIQAAIVRIMKMRKRLNHTNLISEVLNQLSTRFKPKVPVIKKCIDILIEKEYLERMEGHKDTYSYLA 774          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL4_DICDI (Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 4.124e-20
Identity = 78/245 (31.84%), Postives = 110/245 (44.90%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFN---SSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPN--------------------------------TKTISPTDHFEFNSKFTDKMRRIKIP----LPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            EVF +FY +K   + L W  +L  C L   F     EL V+ +Q   L LFN       LS+ +I     L+  ++ + L SL  +K  IL ++ +                                TK I  TD F FNSKF+ K+ +IK+                      R+Y +DA+IVRIMK+RK L H  L+ E V  L   F+P    +KKRIE LI ++YL RD  N  ++ Y+A
Sbjct:  560 EVFNKFYLSKHNGKTLKWQNALSYCVLKANFIQGKKELSVSLFQTIILYLFNDVIDGGELSFRDIQANTGLAIPELKKNLLSLCSSKSDILIQKKSSTSSNTSSNTSSNTSSSASGSASGGASGGATKTKVIDETDTFLFNSKFSSKLFKIKVNSIQIQETVEENQKTNENIISDRQYQVDAAIVRIMKTRKTLAHNLLISELVSLL--KFQPKPVDLKKRIEILIEKEYLCRDPENAMIYNYMA 802          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL3_CAEEL (Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 1.200e-19
Identity = 72/241 (29.88%), Postives = 109/241 (45.23%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKF------------------------ESRTTE---LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYK---ILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPL-----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            E+F ++Y  K   RKLT    LG  ++   F                        + R  E   L V T+Q   LL FN  +R+S  ++M +L + + ++ R L SL+  K     ++ K      I  +D F  N  F  K+ R+K+ +                     R+  ++A+IVRIMK+RK L H  LV E  +QL   F P    IK+RIE LI R+YL RD+ +   ++Y+A
Sbjct:  537 EMFTQYYTEKHTGRKLTINTLLGNADVKATFYPPPKASMSNEENGPGPSSSGESMKERKPEHKILQVNTHQMIILLQFNHHNRISCQQLMDELKIPERELKRNLQSLALGKASQRILVRKNKGKDAIDMSDEFAVNDNFQSKLTRVKVQMVTGKVESEPEIRETRQKVEDDRKLEVEAAIVRIMKARKKLNHNNLVAEVTQQLRHRFMPSPIIIKQRIETLIEREYLARDEHDHRAYQYIA 777          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_DICDI (Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.200e-19
Identity = 72/215 (33.49%), Postives = 104/215 (48.37%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTE---LIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP--NTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX----RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            ++F++FYQ +   RKL W++ L    L  K+   +     L  +TYQ   LL FN  + L+  EI     L D  +   L SL  AK KIL  +P  + + I+ T  F  N +F +K  +I I +P                   R+  I A+IVRIMK RK L H  L+ E + QL   F P    IKK I+ LI ++YL R +   + + Y+A
Sbjct:  558 QLFQKFYQNQHSGRKLNWLHHLSKGELKTKYLQTSKSGYTLQCSTYQIGVLLQFNQYETLTSEEIQESTQLIDSVLKGTLTSL--AKSKILLADPPLDDEEIAKTTKFSLNKQFKNKKTKIFINVPVLTQVKEEIDSIHKTVEEDRKLQIQAAIVRIMKMRKQLAHSGLMTEVISQLQTRFNPKVNIIKKCIDILIEKEYLMRVEGKKDHYSYVA 770          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL4_CAEEL (Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 3.491e-19
Identity = 69/219 (31.51%), Postives = 108/219 (49.32%), Query Frame = 1
Query:   10 FREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTT-ELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCA--KYKILN--------KEPNTKTISPTDHFEFNSKFTDKMRRIKIPL----PPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            +++FY+ +  +R + W + L +  +   F      ELI T YQ   LLLFN  +  + +EI+    + + +VV+ + +L     K K+L         K+  T      + F  NSKFT+K  R++I                      R+Y IDA++VRIMK+RK L HQ L+ E ++QL   F      IKKR+E LI R+Y+ RD    + + Y+A
Sbjct:  624 YQDFYRVQHGNRNVKWHHGLASAVISASFRPGCKKELIATMYQTVILLLFNKCETWTVAEIVEHTKILEIEVVKNVLALLGGRDKPKVLQRVEGGGSEKKEGTVENLKNEKFVVNSKFTEKRCRVRIAQVNIKTAVEETKEVKEEVNSDRQYKIDAAVVRIMKARKQLNHQTLMTELLQQL--RFPVSTADIKKRLESLIEREYISRDPEEASSYNYVA 840          
The following BLAST results are available for this feature:
BLAST of DY306053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CUL3_HUMAN2.258e-2633.05Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2[more]
CUL4_SCHPO1.049e-2332.52Cullin-4 OS=Schizosaccharomyces pombe GN=cul4 PE=1... [more]
CUL2_PONAB3.985e-2330.81Cullin-2 OS=Pongo abelii GN=CUL2 PE=2 SV=1[more]
CUL2_MOUSE3.985e-2330.81Cullin-2 OS=Mus musculus GN=Cul2 PE=1 SV=2[more]
CUL2_HUMAN3.985e-2330.81Cullin-2 OS=Homo sapiens GN=CUL2 PE=1 SV=2[more]
CUL1_DROME6.362e-2131.78Cullin homolog 1 OS=Drosophila melanogaster GN=lin... [more]
CUL4_DICDI4.124e-2031.84Cullin-4 OS=Dictyostelium discoideum GN=culD PE=3 ... [more]
CUL3_CAEEL1.200e-1929.88Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 S... [more]
CUL1_DICDI1.200e-1933.49Cullin-1 OS=Dictyostelium discoideum GN=culA PE=1 ... [more]
CUL4_CAEEL3.491e-1931.51Cullin-4 OS=Caenorhabditis elegans GN=cul-4 PE=1 S... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BF03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306053 ID=DY306053; Name=DY306053; organism=Citrus sinensis; type=EST; length=1111bp
GTTGAAGTTTTTAGGGAATTCTATCAAACAAAAACAAAGCATAGGAAACT
TACATGGATCTACTCACTGGGTACTTGTAACCTCCTTGGAAAATTTGAAT
CAAGAACTACAGAGTTGATTGTCACAACCTATCAGGCTTCTGCGTTGCTT
TTATTCAATTCCTCAGATAGGCTGAGTTATTCAGAGATCATGACGCAGTT
GAACTTGTCCGACGATGATGTTGTTAGATTGCTTCATTCCTTGTCATGTG
CAAAATATAAGATTCTCAACAAAGAGCCAAATACAAAAACCATCTCTCCT
ACTGATCACTTTGAGTTCAATTCCAAGTTTACCGACAAAATGAGGAGAAT
CAAGATTCCTCTCCCTCCTGTGGATGAGAAAAAGAAGGTTATTGAAGATG
TTGATAAGGACAGACGATATGCCATTGATGCCTCAATTGTGCGCATTATG
AAAAGTCGGAAAGTTTTGGGGCACCAACAATTGGTATTGGAGTGTGTCGA
GCAGTTGGGCCGCATGTTCAAGCCTGATTTCAAGGCAATCAAAAAGAGGA
TTGAAGATCTTATCACTCGAGACTATCTCGAGAGGGACAAATCTAATCCC
AATATGTTCAGGTACTTGGCGTGATCTAGAGTGGTTGGTAATCCAGATGA
AGTGGTGACATTTGCTGCCCACAAAGAGGGTTAGTTCATGGTGGAACTGG
GACAAACATATGTAAACCGCCGCCAGGAGTGCCTTGTCTGGGGATTGCTC
AGAAGCAGAGCTGCGATGCTTGTACATTTTGCTGTTGGGCCAGGTGTGAG
GAACAAGTATAAATTTCCAAACCATGTTTGAGAAAAAGTTAATCCTTCCT
TAATGTGGTTCAGTGCCACGAGAAACAATGCTGTTCTGTCTCCTTATTCT
GCAATCCCATTTTCCGGCTTGATGTTTGTTTGGGAATTCCCCTTCCTTTT
CCTTTAAAATTTCCCTTTCCCCAAAAAATATTTAACTTTAAATCCAACCA
AAATTGTTGTTTTGTATTTTGAAATTAATAAAAAAATTTCCGGGGGGAAA
AATCTCCCCAACAAAGCGGACTTTTTATGCTCCCTTTTTTTAAATTCCGT
TTTTAAAAGGC
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