DY306053

Overview
NameDY306053
Unique NameDY306053
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1111
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_PONAB (Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.955e-19
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 FREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            F  FY ++   RKLTW+Y L    L+   F++R T L  +T+Q + LL +N+ D  +  ++     +  D + ++L  L  +K  +L   N   +   + P    +    + +K  R+ I +P                   R+  I A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK I+ LI ++YLER     + + YLA
Sbjct:  566 FTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_MOUSE (Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.955e-19
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 FREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            F  FY ++   RKLTW+Y L    L+   F++R T L  +T+Q + LL +N+ D  +  ++     +  D + ++L  L  +K  +L   N   +   + P    +    + +K  R+ I +P                   R+  I A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK I+ LI ++YLER     + + YLA
Sbjct:  566 FTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_HUMAN (Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 5.955e-19
Identity = 68/212 (32.08%), Postives = 104/212 (49.06%), Query Frame = 1
Query:   10 FREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKIL---NKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            F  FY ++   RKLTW+Y L    L+   F++R T L  +T+Q + LL +N+ D  +  ++     +  D + ++L  L  +K  +L   N   +   + P    +    + +K  R+ I +P                   R+  I A+IVRIMK RKVL HQQL+ E + QL   FKP    IKK I+ LI ++YLER     + + YLA
Sbjct:  566 FTAFYASRHSGRKLTWLYQLSKGELVTNCFKNRYT-LQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDILAQVLQILLKSKLLVLEDENANVDEVELKPDTLIKLYLGYKNKKLRVNINVPMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 776          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL2_DICDI (Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.016e-18
Identity = 63/243 (25.93%), Postives = 108/243 (44.44%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPN--------------------------------TKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            +  F+++Y T+ + RKL W++ L        F  ++ +  VT +Q   LL+FN+ + +S  EI    NL+++++ R L SL  AK  I  K+                                  + + S T  +  NS +++K  ++K+                      R+  + ASIVRIMK+RK + H  L+ E +E     F+P+   IKK IE LI ++Y+ R +   + + Y A
Sbjct:  529 ISAFQQYYSTQHQGRKLNWLHHLCKAEAKSFFAKKSYDFQVTNFQLGILLIFNTQESVSLEEITKFTNLNENELSRTLQSLIEAKILISKKKDQNSINNNNNNNNNNNNNGEGNNSLVDSANNMQPSSSSSSTQEYTVNSAYSNKRSKVKVSSSLQKETPLQNEETYKGIDEDRKLYLQASIVRIMKARKTMNHVSLIQEVIEHSRLRFQPNIPMIKKCIEQLIEKEYITRAEGESDRYLYAA 771          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_CAEEL (Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.467e-17
Identity = 63/214 (29.44%), Postives = 96/214 (44.86%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDD----VVRLLHSLSCAKYKILNKE---PNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            +E+F +FY  K   R+LTW+YS     +      +      TT Q   +LLFN  D  +  +I     + +      V  L+ +L       L KE   P T T+S    +  N K    + +  +                  R+  I A IVRIMK+RK + HQQL+ E + QL   FKP  + IK+ I  LI ++Y+ R +   +++ YLA
Sbjct:  568 IEIFGQFYNEKFNGRRLTWVYSQSRGEITSTAFPKKYVFTATTAQMCTMLLFNEQDSYTVEQIAAATKMDEKSAPAIVGSLIKNLVLKADTELQKEDEVPMTATVSLNKAY-MNKKVRVDLSKFTMKQDAVRDTENVQKNVEEDRKSVISACIVRIMKTRKRVQHQQLMTEVITQLSGRFKPKVEMIKRCIGSLIEKEYMLRTEGQKDLYEYLA 780          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL1_SCHPO (Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 2.502e-17
Identity = 61/201 (30.35%), Postives = 96/201 (47.76%), Query Frame = 1
Query:    4 EVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIV---TTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER 585
            E F+ +Y +    RKL+W++ L    +  +   +T    V   +TYQ   LLL+N  D  +Y E+     LS D +  +L+    AK  +L    N K   P   ++ N  F  K  R+++ LP                   R+  + ++IVRIMK+R+ L H  LV E ++Q+   F P    IK+ I+ LI ++YLER
Sbjct:  559 EGFQNYYYSCHNGRKLSWLFHLSKGEIKARINPQTNVTYVFQVSTYQMGVLLLYNHRDSYTYEELAKITGLSTDFLTGILNIFLKAKVLLLGD--NDKLGDPNSTYKINENFRMKKIRVQLNLPIRSEQKQESLETHKTIEEDRKLLLQSAIVRIMKARRTLKHVVLVKETIDQIKSRFTPKVSDIKQCIDMLIEKEYLER 757          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL2_CAEEL (Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.118e-16
Identity = 57/214 (26.64%), Postives = 102/214 (47.66%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEPNTKTISPTDHFEFNSKFTDKMRRIKIPLPPXXXXXXXXXXXXXX-------RRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            ++ F +FY  K   RKLTW++++   ++   +  +     +  YQ +ALL F   D +   +I  ++ +S D +++ + ++      +     + + ++       N   T K  + ++  P                      R+Y ++ +IVRIMK+RKVL H  LV E ++Q    F PD   IKK IEDLI + Y++R   N + ++YLA
Sbjct:  568 IQEFEKFYTGKHNGRKLTWLFNMSQGDVRLTYLDKQYVAQMYVYQMAALLCFERRDAILVKDIGEEIGVSGDYLLKTIRTI----LDVTLLTCDDQNLTADSLVRLNMSMTSKRMKFRLQAPQVNKAVEKEQEAVANTFQVSQDRKYYMECAIVRIMKTRKVLKHNALVTEIMDQTKGRFSPDVPFIKKSIEDLIEKMYIQRTDQN-DEYQYLA 776          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL5_DICDI (Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.373e-15
Identity = 60/220 (27.27%), Postives = 102/220 (46.36%), Query Frame = 1
Query:    1 VEVFREFYQTKTKHRKLTWIYSLGTCNLLGK-FESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILN-KEPNTKTISPTDHFEFNSKFTDKMRRIKIPLP--------PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLER---DKSNPNMFRYLA 621
            +  F  FY+   + R LT++Y     ++  +  + +  +L  T YQ + LL+FN +D+++   I   + L +  +   L  L+  K  I+   EP+ K  +    F  NSKF+ K  ++   +                        R + + A+IVRIMKS+K + H  L +E   Q+ + F P   AIKK IE LI ++Y+ R   D  +   + Y+A
Sbjct:  533 ITYFESFYKKSYQGRVLTFLYDFSRADVDSRQAKGKIYKLTTTAYQMAILLMFNGADKITRFLINDTIGLDETSI--RLPLLALIKTGIIECSEPSFKNWNNDTEFTVNSKFSSKKMKVSCNIAVQIGETKQSEGQQTVSEQEIEKERFFKLQAAIVRIMKSKKTMTHNDLTVETTTQVSKWFTPKITAIKKAIEYLIDQEYIRRTTDDNPSARKYEYMA 750          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL6_CAEEL (Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.381e-14
Identity = 62/211 (29.38%), Postives = 92/211 (43.60%), Query Frame = 1
Query:   10 FREFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDRLSYSEIMTQLNLSDDDVVRLLHSLSCAKYKILNKEP-NTKTISPTDHF-EFNSKFTDKMRRIKIPLP-----PXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            F  FY      R+L W YS     +  K   +    IVT  Q   L LFN  D  +  +I   + ++      ++ SL+     +L  +  N K   P D     N+K+ +K  R+ +                       R+Y I A IVRIMK+RK L H  L+ E + QL   F P+ + IK  IE LI + Y+ R ++  N++ YLA
Sbjct:  519 FDTFYNASHNGRRLNWAYSQCRGEVNSKAFEKKYVFIVTASQLCTLYLFNEQDSFTIEQISKAIEMTAKSTSAIVGSLNPVIDPVLVVDKGNEKDGYPPDAVVSLNTKYANKKVRVDLTTAIKKATADRETDAVQNTVESDRKYEIKACIVRIMKTRKSLTHTLLINEIISQLKSRFTPNVQMIKICIEILIEQLYIRRSENEHNVYEYLA 729          
BLAST of DY306053 vs. ExPASy Swiss-Prot
Match: CUL5_PONAB (Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 6.377e-13
Identity = 68/223 (30.49%), Postives = 99/223 (44.39%), Query Frame = 1
Query:   16 EFYQTKTKHRKLTWIYSLGTCNLLGKFESRTTELIVTTYQASALLLFNSSDR--LSYSEIMTQLNLSDDDVVRLLHSLSC---AKYKILNKEPNTKTISPTDH-----FEFNSKFT-------DKMRRI----KIPLPPXXXXXXXXXXXXXXRRYAIDASIVRIMKSRKVLGHQQLVLECVEQLGRMFKPDFKAIKKRIEDLITRDYLERDKSNPNMFRYLA 621
            EFY+     RKL W + +    +  K E    +L VTT+Q + L  +N   R  +S+  +     L D ++ R L SL      K ++L  EP     SP D      F  N +F+        K  +I    ++ L                R      +I++IMK RK + + QL  E VE L  MF P  K IK++IE LI   Y+ RD+S+ N F Y+A
Sbjct:  560 EFYKKNHSGRKLHWHHLMSNGIITFKNEVGQYDLEVTTFQLAVLFAWNQRPREKISFENLKLATELPDAELRRTLWSLVAFPKLKRQVLLYEPQVN--SPKDFTEGTLFSVNQEFSLIKNAKVQKRGKINLIGRLQLTTERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 780          
The following BLAST results are available for this feature:
BLAST of DY306053 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
CUL1_PONAB5.955e-1932.08Cullin-1 OS=Pongo abelii GN=CUL1 PE=2 SV=1[more]
CUL1_MOUSE5.955e-1932.08Cullin-1 OS=Mus musculus GN=Cul1 PE=1 SV=1[more]
CUL1_HUMAN5.955e-1932.08Cullin-1 OS=Homo sapiens GN=CUL1 PE=1 SV=2[more]
CUL2_DICDI1.016e-1825.93Cullin-2 OS=Dictyostelium discoideum GN=culB PE=2 ... [more]
CUL1_CAEEL1.467e-1729.44Cullin-1 OS=Caenorhabditis elegans GN=cul-1 PE=1 S... [more]
CUL1_SCHPO2.502e-1730.35Cullin-1 OS=Schizosaccharomyces pombe GN=cul1 PE=1... [more]
CUL2_CAEEL2.118e-1626.64Cullin-2 OS=Caenorhabditis elegans GN=cul-2 PE=1 S... [more]
CUL5_DICDI1.373e-1527.27Cullin-5 OS=Dictyostelium discoideum GN=culE PE=3 ... [more]
CUL6_CAEEL3.381e-1429.38Cullin-6 OS=Caenorhabditis elegans GN=cul-6 PE=1 S... [more]
CUL5_PONAB6.377e-1330.49Cullin-5 OS=Pongo abelii GN=CUL5 PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BF03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306053 ID=DY306053; Name=DY306053; organism=Citrus sinensis; type=EST; length=1111bp
GTTGAAGTTTTTAGGGAATTCTATCAAACAAAAACAAAGCATAGGAAACT
TACATGGATCTACTCACTGGGTACTTGTAACCTCCTTGGAAAATTTGAAT
CAAGAACTACAGAGTTGATTGTCACAACCTATCAGGCTTCTGCGTTGCTT
TTATTCAATTCCTCAGATAGGCTGAGTTATTCAGAGATCATGACGCAGTT
GAACTTGTCCGACGATGATGTTGTTAGATTGCTTCATTCCTTGTCATGTG
CAAAATATAAGATTCTCAACAAAGAGCCAAATACAAAAACCATCTCTCCT
ACTGATCACTTTGAGTTCAATTCCAAGTTTACCGACAAAATGAGGAGAAT
CAAGATTCCTCTCCCTCCTGTGGATGAGAAAAAGAAGGTTATTGAAGATG
TTGATAAGGACAGACGATATGCCATTGATGCCTCAATTGTGCGCATTATG
AAAAGTCGGAAAGTTTTGGGGCACCAACAATTGGTATTGGAGTGTGTCGA
GCAGTTGGGCCGCATGTTCAAGCCTGATTTCAAGGCAATCAAAAAGAGGA
TTGAAGATCTTATCACTCGAGACTATCTCGAGAGGGACAAATCTAATCCC
AATATGTTCAGGTACTTGGCGTGATCTAGAGTGGTTGGTAATCCAGATGA
AGTGGTGACATTTGCTGCCCACAAAGAGGGTTAGTTCATGGTGGAACTGG
GACAAACATATGTAAACCGCCGCCAGGAGTGCCTTGTCTGGGGATTGCTC
AGAAGCAGAGCTGCGATGCTTGTACATTTTGCTGTTGGGCCAGGTGTGAG
GAACAAGTATAAATTTCCAAACCATGTTTGAGAAAAAGTTAATCCTTCCT
TAATGTGGTTCAGTGCCACGAGAAACAATGCTGTTCTGTCTCCTTATTCT
GCAATCCCATTTTCCGGCTTGATGTTTGTTTGGGAATTCCCCTTCCTTTT
CCTTTAAAATTTCCCTTTCCCCAAAAAATATTTAACTTTAAATCCAACCA
AAATTGTTGTTTTGTATTTTGAAATTAATAAAAAAATTTCCGGGGGGAAA
AATCTCCCCAACAAAGCGGACTTTTTATGCTCCCTTTTTTTAAATTCCGT
TTTTAAAAGGC
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