DY306046

Overview
NameDY306046
Unique NameDY306046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1267
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_HUMAN (60S acidic ribosomal protein P1 OS=Homo sapiens GN=RPLP1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.197e-12
Identity = 43/109 (39.45%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  SDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_BOVIN (60S acidic ribosomal protein P1 OS=Bos taurus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.197e-12
Identity = 43/109 (39.45%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  SDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSTAAAPAEEKKVEAKKEESEESDDDMGFGLFD 114          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_ALTAL (60S acidic ribosomal protein P1 OS=Alternaria alternata GN=ALTA12 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.895e-12
Identity = 41/106 (38.68%), Postives = 56/106 (52.83%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E A +YA LIL DDG+ +TA+K+ +L+KAA + ++E  W +LFAK  E K++ DL+LNVGS                                  SD+DMGF LFD
Sbjct:    5 ELATSYAALILADDGVDITADKLQSLIKAAKIEEVEPIWTTLFAKALEGKDVKDLLLNVGSGGGAAPLPEALLLRWRAADAAPAAEEKKEEEKEESDEDMGFGLFD 110          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_RAT (60S acidic ribosomal protein P1 OS=Rattus norvegicus GN=Rplp1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.393e-12
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  S+DDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGPAPSAAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_MOUSE (60S acidic ribosomal protein P1 OS=Mus musculus GN=Rplp1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.393e-12
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG----SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     N+  LI NVG    +                                  S+DDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVSVEPFWPGLFAKALANVNIGSLICNVGAGGPAPAAGAAPAGGAAPSTAAAPAEEKKVEAKKEESEESEDDMGFGLFD 114          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_OSCBR (60S acidic ribosomal protein P1 OS=Oscheius brevesophaga GN=rpl-21 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.090e-11
Identity = 41/107 (38.32%), Postives = 53/107 (49.53%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNV--GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA LIL DD +A+T +KIA L+KAAN++ E +WP LFAK  E  ++ +LI +V  G+                                  SDDDMGF L D
Sbjct:    6 ELACVYAALILQDDEVAITGDKIATLLKAANIEFEPFWPGLFAKALEGVDVKNLITSVSSGASAGPAQAAAAAPAGGAPAAAAPAESKEGRRSQGESDDDMGFGLLD 112          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_CHICK (60S acidic ribosomal protein P1 OS=Gallus gallus GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.090e-11
Identity = 42/109 (38.53%), Postives = 51/109 (46.79%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNV----GSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + VT +KI AL+KAA V +E +WP LFAK     ++  LI NV    G+                                  SDDDMGF LFD
Sbjct:    6 ELACIYSALILHDDEVTVTEDKINALIKAAGVNVEPFWPGLFAKALANIDIGSLICNVGAGGGAPAAAAPAGGAAPAGGGAAPAEEKKEEEKKEESEESDDDMGFGLFD 114          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_DICDI (60S acidic ribosomal protein P1 OS=Dictyostelium discoideum GN=rplp1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.424e-11
Identity = 40/110 (36.36%), Postives = 54/110 (49.09%), Query Frame = 3
Query:   54 IMAGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVG-SXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            I   E AC Y+ L+L DDGI +TA+KI  L++AAN+ + S+WP L+A+   K N+ +L+LN G S                                  SDDDMG  LFD
Sbjct:    4 IKTEELACIYSGLLLQDDGIEITADKIKTLLEAANITVASHWPGLYARSLAKVNIPELLLNAGSSGAAGAAPVAAATSAAAPAAAAKKETKKEEVKKEESDDDMGMGLFD 113          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_ARTSA (60S acidic ribosomal protein P1 OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.860e-11
Identity = 38/105 (36.19%), Postives = 48/105 (45.71%), Query Frame = 3
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC YA LIL DD + +T EK+  +++AA V +E YWP LF K  E  +L  +I NVGS                                   D+DMGF LFD
Sbjct:    6 ELACVYAALILLDDDVDITTEKVNTILRAAGVSVEPYWPGLFTKALEGLDLKSMITNVGSGVGAAPAAGGAAAATEAPAAKEEKKEEKKEESEEEDEDMGFGLFD 110          
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA3_SCHPO (60S acidic ribosomal protein P1-alpha 3 OS=Schizosaccharomyces pombe GN=rpa3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.429e-11
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 3
Query:   60 AGEQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            A E A +Y+ LIL D+GI +T++K+ +L KAANV +E  W ++FAK  E K+L +L+LN+GS                                   SD+DMGF LFD
Sbjct:    3 ASELATSYSALILADEGIEITSDKLLSLTKAANVDVEPIWATIFAKALEGKDLKELLLNIGSAAAAPAAGGAGAPAAAAGGEAAAEEQKEEAKEEEESDEDMGFGLFD 110          
The following BLAST results are available for this feature:
BLAST of DY306046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_HUMAN2.197e-1239.4560S acidic ribosomal protein P1 OS=Homo sapiens GN... [more]
RLA1_BOVIN2.197e-1239.4560S acidic ribosomal protein P1 OS=Bos taurus GN=R... [more]
RLA1_ALTAL4.895e-1238.6860S acidic ribosomal protein P1 OS=Alternaria alte... [more]
RLA1_RAT6.393e-1238.5360S acidic ribosomal protein P1 OS=Rattus norvegic... [more]
RLA1_MOUSE6.393e-1238.5360S acidic ribosomal protein P1 OS=Mus musculus GN... [more]
RLA1_OSCBR1.090e-1138.3260S acidic ribosomal protein P1 OS=Oscheius breves... [more]
RLA1_CHICK1.090e-1138.5360S acidic ribosomal protein P1 OS=Gallus gallus G... [more]
RLA1_DICDI1.424e-1136.3660S acidic ribosomal protein P1 OS=Dictyostelium d... [more]
RLA1_ARTSA1.860e-1136.1960S acidic ribosomal protein P1 OS=Artemia salina ... [more]
RLA3_SCHPO2.429e-1137.0460S acidic ribosomal protein P1-alpha 3 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306046 ID=DY306046; Name=DY306046; organism=Citrus sinensis; type=EST; length=1267bp
GACAAGCCAAACGCAGCCTCTCTTAGTGTGCGATTTTAGAATTATCAATT
GCAATAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCA
CGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGG
CAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTG
GCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGGTGG
CGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGCTGGTGGTGCCGCAG
CCGCCGCCCCTGCCGCTGAGGAGAAAAAGGAAGAACCAAAGGAAGAAAGT
GATGATGATATGGGATTCAGTTTGTTTGATTAAACACCGCATTCAGTTGA
GTCAGAATTTGTTCTCTTCTTTTTTTTTTCCTGTTTTTGTTTTATTGGAA
TGTAGGACGCAGCTGAGTGGTATAGCTCAGTTTTTGTTTTTGTTTTAGTT
CTATTTCTCGCGGTGTACTTCGACAGTAAGTTTCTAATTACAAAATGAAT
ATTATCATTCTCTCAAGAACCAACCAAAAAAAAGAAAAAATTTAAAAAAA
AAAAAAAAAAAAACGGAAATTATATCCCCCGGGAGGGGGGCCCGGACCCC
TATTCCCCTATAATGGAGCCCCAATAACATTCCACGGGCCGCCCTTTATA
CCCCCCCGCTCGGGAAAAACCCGAGTTTTACCCCATTTAATCCTCCTCTT
GAACCACCCCCCCCTTTCCCCGGTGGGGATAAACGAAAAAAGCCCCCCCC
TATTCCCCTTCCCACTATTGGCCCCACCTCAAAGGGGTCAGAAGGAATAA
TTTATCCTAAACTTTTTTATTAAACTCACGTAAAATTTTTAAAAAAAACA
ACTCTTTTTTAAACTAAAGGACCAAAATTCGAAAAAACCCAAAAAAAAAA
AAAAAAAAAAACGAAAAGTAAATGTATAGTTTAATTTCTTTTTTTAATAT
TACAATATTTATATTATAAAATAAGTTTAAAACTAACACAAAGTAACGGA
ATTAAAATAAACTTCTTCAAGCATAGAATTCTTAATCAAATTCATCACTA
CTTATACACCTTATAATCTATTACTAATAAGCAATATTTTCTCCTCACCA
CAAATTCTCCGTACACACCCACAACTCTACACCCAGTCACCCTACACCAT
CCCCCCTACCATGCAATCACCACGATAACTATAAAAAGATAAGAGAAATC
ATCGTTAGACAGCAGCG
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