DY306046

Overview
NameDY306046
Unique NameDY306046
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1267
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_POLPE (60S acidic ribosomal protein P1 OS=Polyorchis penicillatus PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.173e-11
Identity = 36/60 (60.00%), Postives = 43/60 (71.67%), Query Frame = 3 
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS 245
            E AC Y+ LILHDD  A+TAEK+  ++ AANV +E YWP LFA   E KN+ DLI NVGS
Sbjct:    8 ELACVYSALILHDD--AITAEKMNKIISAANVNVEPYWPGLFA--LEGKNIGDLICNVGS 63
[Close]
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_PIG (60S acidic ribosomal protein P1 OS=Sus scrofa GN=RPLP1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.232e-11
Identity = 40/109 (36.70%), Postives = 48/109 (44.04%), Query Frame = 3 
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANVQIESYWPSLFAKLAEKKNLDDLILNVGS----XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC Y+ LILHDD + V  +KI AL+KAA V +E +WP  FAK     N+  LI NVG+                                      SDDDMGF  FD
Sbjct:    6 ELACIYSALILHDDEVTVPEDKINALIKAAGVNVEPFWPGFFAKALANVNIGSLICNVGAGGPPPPAGAAPPGGPAPPPPAAPAEEKKVEAKKEEFEESDDDMGFGFFD 114
[Close]
BLAST of DY306046 vs. ExPASy Swiss-Prot
Match: RLA1_ASPFU (60S acidic ribosomal protein P1 OS=Aspergillus fumigatus GN=AFUA_1G06830 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.232e-11
Identity = 43/107 (40.19%), Postives = 53/107 (49.53%), Query Frame = 3 
Query:   66 EQACTYATLILHDDGIAVTAEKIAALVKAANV-QIESYWPSLFAKLAEKKNLDDLILNVGS-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 380
            E AC+YA LIL DDG+ +TA+KI  L+ AA V  +E  W SLFAK  E K++ DL+ NVGS                                   SD+DMGF LFD
Sbjct:    5 ELACSYAALILADDGVEITADKIQTLLGAAKVADVEPIWTSLFAKALEGKDIKDLLTNVGSGGAAAPAAVGGAAAGAAAPAEAAAAEEKKEEEKEESDEDMGFGLFD 111
The following BLAST results are available for this feature:
BLAST of DY306046 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RLA1_POLPE3.173e-1160.0060S acidic ribosomal protein P1 OS=Polyorchis peni... [more]
RLA1_PIG9.232e-1136.7060S acidic ribosomal protein P1 OS=Sus scrofa GN=R... [more]
RLA1_ASPFU9.232e-1140.1960S acidic ribosomal protein P1 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3BE07RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306046 ID=DY306046; Name=DY306046; organism=Citrus sinensis; type=EST; length=1267bp
GACAAGCCAAACGCAGCCTCTCTTAGTGTGCGATTTTAGAATTATCAATT
GCAATAATGGCCGGAGAGCAAGCTTGCACCTACGCCACTTTGATTCTCCA
CGACGATGGAATCGCAGTCACTGCGGAGAAGATCGCGGCTTTGGTTAAGG
CAGCGAATGTGCAAATAGAGTCTTACTGGCCAAGCCTTTTTGCGAAGTTG
GCTGAAAAGAAAAACTTGGATGATCTCATCTTGAATGTTGGCTCCGGTGG
CGGTGCTGCCGCACCCGTTGCCGCCGCCGCCCCTGCTGGTGGTGCCGCAG
CCGCCGCCCCTGCCGCTGAGGAGAAAAAGGAAGAACCAAAGGAAGAAAGT
GATGATGATATGGGATTCAGTTTGTTTGATTAAACACCGCATTCAGTTGA
GTCAGAATTTGTTCTCTTCTTTTTTTTTTCCTGTTTTTGTTTTATTGGAA
TGTAGGACGCAGCTGAGTGGTATAGCTCAGTTTTTGTTTTTGTTTTAGTT
CTATTTCTCGCGGTGTACTTCGACAGTAAGTTTCTAATTACAAAATGAAT
ATTATCATTCTCTCAAGAACCAACCAAAAAAAAGAAAAAATTTAAAAAAA
AAAAAAAAAAAAACGGAAATTATATCCCCCGGGAGGGGGGCCCGGACCCC
TATTCCCCTATAATGGAGCCCCAATAACATTCCACGGGCCGCCCTTTATA
CCCCCCCGCTCGGGAAAAACCCGAGTTTTACCCCATTTAATCCTCCTCTT
GAACCACCCCCCCCTTTCCCCGGTGGGGATAAACGAAAAAAGCCCCCCCC
TATTCCCCTTCCCACTATTGGCCCCACCTCAAAGGGGTCAGAAGGAATAA
TTTATCCTAAACTTTTTTATTAAACTCACGTAAAATTTTTAAAAAAAACA
ACTCTTTTTTAAACTAAAGGACCAAAATTCGAAAAAACCCAAAAAAAAAA
AAAAAAAAAAACGAAAAGTAAATGTATAGTTTAATTTCTTTTTTTAATAT
TACAATATTTATATTATAAAATAAGTTTAAAACTAACACAAAGTAACGGA
ATTAAAATAAACTTCTTCAAGCATAGAATTCTTAATCAAATTCATCACTA
CTTATACACCTTATAATCTATTACTAATAAGCAATATTTTCTCCTCACCA
CAAATTCTCCGTACACACCCACAACTCTACACCCAGTCACCCTACACCAT
CCCCCCTACCATGCAATCACCACGATAACTATAAAAAGATAAGAGAAATC
ATCGTTAGACAGCAGCG
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