EY702728

Overview
NameEY702728
Unique NameEY702728
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length940
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 6.445e-45
Identity = 95/174 (54.60%), Postives = 122/174 (70.11%), Query Frame = 1
Query:  154 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSDEPT-EKTRPFPALLDVALVQTPL-VTVSMTLSGCIRWGI*FPSHGE 669
            K  K+KAY+ RYQV+++RRREGKTDY+ R RLI QDKNKYN+PKYR V R TN D+ AQ++ + I GD VL +AYAHELPR+G++VGLTNYA+ Y TGLLLARR+L  L++   Y+G  +  G+ +  +P  +K RPF A LDV L +T     V   L G +  GI  P HGE
Sbjct:    5 KVVKTKAYYSRYQVQFRRRREGKTDYQQRHRLITQDKNKYNSPKYRLVARITNTDVIAQVVYSKIVGDFVLCAAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVP-HGE 177          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 3.713e-44
Identity = 89/149 (59.73%), Postives = 115/149 (77.18%), Query Frame = 1
Query:  154 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYS-DEPTEKTRPFPALLDVALVQT 597
            KA K+KAYFKR+QVKY+RRREGKTDY AR RLI QDKNKYN PKYRFVVR TN  +  Q++ A++ GD ++ SA + EL RYG++VGLTNY+AAY TGLLLARR+LK   +  E++G  + +GE+Y  +E +E+ RPF  +LDV +V T
Sbjct:    5 KAIKNKAYFKRFQVKYRRRREGKTDYAARRRLILQDKNKYNAPKYRFVVRVTNSRVLCQVMYATLQGDRLVCSADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVAT 153          

HSP 2 Score: 23.8682 bits (50), Expect = 3.713e-44
Identity = 9/18 (50.00%), Postives = 10/18 (55.56%), Query Frame = 2
Query:  626 QGAFDGGFDFPHMENIFP 679
            +GA DGG   PH    FP
Sbjct:  164 KGACDGGLHIPHSNKRFP 181          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 6.310e-44
Identity = 87/149 (58.39%), Postives = 108/149 (72.48%), Query Frame = 1
Query:  154 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGE-DYSDEPTEKTRPFPALLDVALVQT 597
            K  KS AY  R+Q  ++RRREGKTDY  R RL+ Q K KYNTPKYR VVRFTNKDI  QIIS++I GD+VLA+AY+HELPRYG+  GLTN+AAAY TGLL+ARR L+ L +D  Y+G  E  GE + ++   +  RPF   LD+ L +T
Sbjct:    5 KDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRT 153          

HSP 2 Score: 26.9498 bits (58), Expect = 6.310e-44
Identity = 11/18 (61.11%), Postives = 12/18 (66.67%), Query Frame = 2
Query:  626 QGAFDGGFDFPHMENIFP 679
            +GA DGG   PH EN FP
Sbjct:  164 KGASDGGLYVPHSENRFP 181          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 172.555 bits (436), Expect = 2.994e-42
Identity = 83/120 (69.17%), Postives = 97/120 (80.83%), Query Frame = 1
Query:  154 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 513
            K  K+KAYFKRYQVK++RRREGKTDY AR RL+ QDKNKYNTPKYR +VR TN+DI  QI  A I GD+++ +AYAHELP+YG++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:    5 KVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCAAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.361e-40
Identity = 84/149 (56.38%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  154 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGE-DYSDEPTEKTRPFPALLDVALVQT 597
            KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE + ++   +  RPF   LDV L +T
Sbjct:    5 KAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRT 153          

HSP 2 Score: 25.0238 bits (53), Expect = 1.361e-40
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  626 QGAFDGGFDFPHMENIFP 679
            +GA DGG   PH  N FP
Sbjct:  164 KGASDGGLFIPHSPNRFP 181          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 163.31 bits (412), Expect = 1.361e-40
Identity = 84/149 (56.38%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  154 KAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGE-DYSDEPTEKTRPFPALLDVALVQT 597
            KA KS  YF RYQ KY+RRREGKTDY AR RLI Q KNKYN PKYR VVRF+N+ +T QI+S+ + GD VLA A++ ELPRYG++ GL N+ AAY TGLL+ARR L  + +  +YEG  E  GE + ++   +  RPF   LDV L +T
Sbjct:    5 KAVKSSPYFSRYQTKYRRRREGKTDYYARKRLIAQAKNKYNAPKYRLVVRFSNRFVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRT 153          

HSP 2 Score: 25.0238 bits (53), Expect = 1.361e-40
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  626 QGAFDGGFDFPHMENIFP 679
            +GA DGG   PH  N FP
Sbjct:  164 KGASDGGLFIPHSPNRFP 181          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL18_METS3 (50S ribosomal protein L18P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.075e-15
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:  187 YQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVL 471
            Y+V ++RRREGKTDY AR++L++ DK+       R VVR +N   T Q+I  +  GDI LASA + +L  YG   G +N +A Y TG L A+R L
Sbjct:    7 YKVPFRRRREGKTDYAARMKLVDYDKS-------RLVVRLSNAHATVQVIDYAPEGDITLASAVSKQLANYGYLGGASNTSAVYLTGYLCAKRAL 94          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL18_METTH (50S ribosomal protein L18P OS=Methanobacterium thermoautotrophicum GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 6.951e-15
Identity = 45/101 (44.55%), Postives = 62/101 (61.39%), Query Frame = 1
Query:  172 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLK 474
            A+  RY++ ++RRREGKTDYRAR +++        T K R VVR T   + AQII+  + GD  L SA++ +L + G   G +N AAAY TG L  +R LK
Sbjct:    2 AHGPRYKLAFRRRREGKTDYRARYKMVE-------TGKSRLVVRITTYHVIAQIINVGMNGDETLVSAHSKQLQKMGWLGGTSNTAAAYLTGYLCGKRALK 95          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL18_METHJ (50S ribosomal protein L18P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 9.078e-15
Identity = 67/190 (35.26%), Postives = 86/190 (45.26%), Query Frame = 1
Query:  184 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSDEPTEKTRPFPALLDVALVQ-TPLVTVSMTLSGCIRWGI*FPSH-----------GEHISSDLDKELNNLTLN 717
            RY V ++RRREG+T+Y AR RL+   K        R VVR TN+ I  QII+A + GD    +A + EL ++G E  L N  AAY TG+LLA R LK     A  EG                     A+LD+ L + TP   V   L G +  G   P +           GEHI+        NL  N
Sbjct:    6 RYFVAFRRRREGRTNYHARTRLVVATKP-------RMVVRKTNRHIICQIITAHMEGDRTHVAANSSELRKFGYEGSLNNTPAAYLTGMLLAVRALK-----AGQEG---------------------AILDIGLHRATPGARVFAALKGAVEAGFDIPHNEEILPADERCKGEHIAEYAPDRAGNLPAN 162          
BLAST of EY702728 vs. ExPASy Swiss-Prot
Match: RL18_METLZ (50S ribosomal protein L18P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rpl18p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.098e-13
Identity = 48/113 (42.48%), Postives = 62/113 (54.87%), Query Frame = 1
Query:  184 RYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATG 522
            RY V+++RRREG+TDY  R RLI   +N       R VVR TN+ I  Q+I+A + GD  L    + EL  +G +  L N  AAY TG+L A R  K     A YEG +   G
Sbjct:    6 RYFVQFRRRREGRTDYYQRQRLIVSGRN-------RMVVRKTNRHIIIQLIAAQMDGDYTLVHVNSRELVNFGYKGYLGNTPAAYLTGMLFAVRAQK-----AGYEGGIADIG 106          

HSP 2 Score: 23.0978 bits (48), Expect = 1.098e-13
Identity = 10/18 (55.56%), Postives = 11/18 (61.11%), Query Frame = 2
Query:  626 QGAFDGGFDFPHMENIFP 679
            +GA D GFD P  E I P
Sbjct:  121 KGAVDAGFDVPVGEAILP 138          
The following BLAST results are available for this feature:
BLAST of EY702728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 64
Match NameE-valueIdentityDescription
RL5_DICDI6.445e-4554.6060S ribosomal protein L5 OS=Dictyostelium discoide... [more]
RL5_EIMTE3.713e-4459.7360S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_YEAST6.310e-4458.3960S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_PIG2.994e-4269.1760S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]
RL5B_SCHPO1.361e-4056.3860S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5A_SCHPO1.361e-4056.3860S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL18_METS34.075e-1546.3250S ribosomal protein L18P OS=Methanobrevibacter s... [more]
RL18_METTH6.951e-1544.5550S ribosomal protein L18P OS=Methanobacterium the... [more]
RL18_METHJ9.078e-1535.2650S ribosomal protein L18P OS=Methanospirillum hun... [more]
RL18_METLZ1.098e-1342.4850S ribosomal protein L18P OS=Methanocorpusculum l... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-011-E12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702728 ID=EY702728; Name=EY702728; organism=Citrus sinensis; type=EST; length=940bp
GGNNGNGCATTTGCCACCCTTGGCCCTTTCCGGACTTCTTCCTCGACCAC
GCGTCCGGTTAGGGTTTACCACATTGGATTTAGCTCGCGGCTCCTTCACA
ACTTCTCGAACTCTGCTGCTTCTACACTTTGAGCTTCAGCAATGGCCTTT
GCCAAAGCTCAAAAGTCAAAAGCTTACTTTAAGCGATATCAAGTTAAGTA
CAAGAGAAGGCGAGAGGGAAAGACTGACTATCGGGCTAGGATTCGCCTGA
TCAACCAAGATAAAAACAAGTACAACACGCCAAAGTATCGGTTTGTTGTG
CGATTCACCAACAAAGATATCACTGCACAAATTATATCTGCCAGCATAGC
CGGGGATATAGTCCTTGCATCTGCTTATGCCCATGAGCTTCCCCGTTATG
GACTTGAGGTGGGCCTCACTAATTATGCAGCAGCTTATTGCACTGGACTC
CTCTTGGCCCGCCGAGTCCTGAAAATGCTTGAGATGGATGCTGAGTATGA
GGGGCACGTTGAGGCAACAGGAGAGGACTATTCAGATGAGCCAACTGAGA
AAACGAGGCCTTTCCCCGCCCTGCTTGATGTCGCTCTTGTGCAAACACCA
CTGGTAACCGTGTCTATGACGCTTTCAGGGTGCATTCGATGGGGGATTTG
ATTTCCCTCACATGGAGAACATATTTCCTCTGATCTCGATAAGGAATTAA
ACAATTTGACCCTCAACTTCACCCCCAAAACATAATATGTCATCACCCCC
CGCCCTACTCGAGGACGTTGGTTCGCAAACCAGCGCGACAACCGCCAGAC
CCGCGTGTGTGTAAAAGTTCCCAAAAGCACAGCCGCAAAAACCTCACATA
GCTGACTACAAACCGACACTCTAGTCATCGGTACAAACCGTATTCTCGGA
AATATTAGGAAGGAACCCCCTCATCAGGATCTTAGGACAC
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