DY306002

Overview
NameDY306002
Unique NameDY306002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1289
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_BOVIN (CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.499e-40
Identity = 92/203 (45.32%), Postives = 130/203 (64.04%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NL+ E + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL+M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFF-PVIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT8_MOUSE (CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.958e-40
Identity = 90/203 (44.33%), Postives = 132/203 (65.02%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +  +FF  +IY+VK L +
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT8_HUMAN (CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.958e-40
Identity = 90/203 (44.33%), Postives = 132/203 (65.02%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWASNLE E   I +++  Y +I+MDTEFPG+V         RP    R   D+ Y++L+ NVD L +IQ+GLT ++  G  P   SG N    W+FNF+ F++  D ++ DSI+LL   G+ F+++ EEG+D++ FAEL+M+SG+V  ++V W++FHS YDFGY+VK+LT   LP    EF  +  +FF  +IY+VK L +
Sbjct:   14 EVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVV--------VRPIGEFRSSIDYQYQLLRCNVDLLKIIQLGLTFTNEKGEYP---SGINT---WQFNFK-FNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELLMTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFF-PSIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_XENLA (CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 3.339e-40
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVEQDFFEILRLFF-PVIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_DANRE (CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 9.716e-40
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NLE E + I QV  ++ +I+MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG++++ FAEL+M+SG+V  E V W++FHS YDFGYL+KIL+   LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLEEEMKRIRQVTRKFNYIAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETMYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILSNSKLPDEEVDFFEILRLFF-PIIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_XENTR (CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 1.269e-39
Identity = 91/203 (44.83%), Postives = 129/203 (63.55%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDH-YKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            EVWA NL+ + + I QVI +Y +++MDTEFPG+V         RP    R  +D+ Y++L+ NVD L +IQ+GLT  +  G  P   S       W+FNF+ F++  D +A DSIELL   GI F+++ EEG+++  FAEL M+SG+V  E V W++FHS YDFGYL+KILT  +LP    +F  + R+FF   IY+VK L +
Sbjct:   14 EVWACNLDDQMKRIRQVIRKYNYVAMDTEFPGVV--------ARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFVNEQGEYPPGTS------TWQFNFK-FNLTEDMYAQDSIELLTSSGIQFKKHEEEGIETQYFAELFMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNSNLPEVELDFFEILRLFF-PVIYDVKYLMK 200          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: POP2_YEAST (Poly(A) ribonuclease POP2 OS=Saccharomyces cerevisiae GN=POP2 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 1.313e-36
Identity = 79/183 (43.17%), Postives = 121/183 (66.12%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEF 821
            R+VW SNL SEF +I Q++ +Y  +S+ TEF G + RP         FR  K   HY+ +++NVD LN IQ+GL+LSD++GN PD     N    W+FNF +FD   +  + +S+ELLR  GI+FE++   G+D   F++L+M SGL+ ++SV+W+T+H+AYD G+L+ IL   S+P+  ++F
Sbjct:  161 RDVWKSNLYSEFAVIRQLVSQYNHVSISTEFVGTLARPIGT------FRS-KVDYHYQTMRANVDFLNPIQLGLSLSDANGNKPD-----NGPSTWQFNF-EFDPKKEIMSTESLELLRKSGINFEKHENLGIDVFEFSQLLMDSGLMMDDSVTWITYHAAYDLGFLINILMNDSMPNNKEDF 330          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CNOT7_CAEEL (CCR4-NOT transcription complex subunit 7 OS=Caenorhabditis elegans GN=ccf-1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.344e-30
Identity = 74/201 (36.82%), Postives = 114/201 (56.72%), Query Frame = 3
Query:  279 VWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTLRR 881
            V+ SN+E EF  I   ++ YP+++MDTEFPG+V  P         FR ++  ++ +V   NV+ L LIQVG  + +  G LP  G       +W+FNF +F  A D  + +S+E+LR  GIDF   +  G+ +  F EL+ +SGL+ +  ++W+TF S YDFGYL+K +T   LP     F    +  F  + +++K L R
Sbjct:   26 VYMSNVEEEFARIRGFVEDYPYVAMDTEFPGVVATP------LGTFRSKEDFNYQQVF-CNVNMLKLIQVGFAMVNDKGELPPTGD------VWQFNF-NFSFAEDMFSHESVEMLRQAGIDFTLLQNNGIPTAVFGELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTS-FDIKILLR 211          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1A_ARATH (Probable CCR4-associated factor 1 homolog 1 OS=Arabidopsis thaliana GN=CAF1-1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 6.760e-25
Identity = 68/202 (33.66%), Postives = 104/202 (51.49%), Query Frame = 3
Query:  273 REVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAEL-MMSSGLVCNESVSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTL 875
            R VW SN++ E   +++ + R+P I+ DTE+PG+++R   D S+          + Y+ +K NV+   LIQ G TL ++ G +     GG    +WE NF +F   +D     SIE LR  G+D ++ R+EGVD   +     + +     + V +VTF  AYDF Y + IL    LP    EF T     FG  +Y+ K +
Sbjct:   10 RRVWRSNVDEEMARMAECLKRFPLIAFDTEYPGIIFRTYFDSSS---------DECYRAMKGNVENTKLIQCGFTLFNAKGEI-----GG----VWEINFSNFGDPSDTRNELSIEFLRRHGLDLQKIRDEGVDMFGYGFFPKLMTVFRSQKHVEFVTFQGAYDFAYFLSILNHGKLPETHGEFATEVVKVFG-QVYDTKVM 192          
BLAST of DY306002 vs. ExPASy Swiss-Prot
Match: CAF1E_ARATH (Probable CCR4-associated factor 1 homolog 5 OS=Arabidopsis thaliana GN=CAF1-5 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.459e-19
Identity = 67/203 (33.00%), Postives = 94/203 (46.31%), Query Frame = 3
Query:  276 EVWASNLESEFELISQVIDRYPFISMDTEFPGLVYRPDVDPSTRPYFRQRKPSDHYKVLKSNVDALNLIQVGLTLSDSSGNLPDLGSGGNNKFIWEFNFRDFDVATDAHAPDSIELLRLQGIDFERNREEGVDSVRFAELMMSSGLVCNES---VSWVTFHSAYDFGYLVKILTRRSLPSGLDEFLTVFRVFFGNNIYEVKTL 875
            EVW  N ++E   I   +     I++DTEFPG +    +D S    +R          +K NVD  +LIQ+GLTL          G G      WE N  DF+ +       SI  L+  G+D ++ REEG+      E  M    + NE    + WVTF  +YD  YL+K LTR+ LP    EF    +   G  +Y+VK +
Sbjct:    4 EVWRWNKQAEMNSIRDCLKHCNSIAIDTEFPGCLKETPMDASDEIRYRD---------MKFNVDNTHLIQLGLTL---------FGKGITKT--WEINLSDFNESKSLKNDKSIAFLKNNGLDLDKIREEGIG---IEEFFMEFSQILNEKHGKMRWVTFQGSYDKAYLLKGLTRKPLPETSKEFDETVQQLLGRFVYDVKKM 183          
The following BLAST results are available for this feature:
BLAST of DY306002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CNOT7_BOVIN1.499e-4045.32CCR4-NOT transcription complex subunit 7 OS=Bos ta... [more]
CNOT8_MOUSE1.958e-4044.33CCR4-NOT transcription complex subunit 8 OS=Mus mu... [more]
CNOT8_HUMAN1.958e-4044.33CCR4-NOT transcription complex subunit 8 OS=Homo s... [more]
CNOT7_XENLA3.339e-4044.83CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
CNOT7_DANRE9.716e-4044.83CCR4-NOT transcription complex subunit 7 OS=Danio ... [more]
CNOT7_XENTR1.269e-3944.83CCR4-NOT transcription complex subunit 7 OS=Xenopu... [more]
POP2_YEAST1.313e-3643.17Poly(A) ribonuclease POP2 OS=Saccharomyces cerevis... [more]
CNOT7_CAEEL5.344e-3036.82CCR4-NOT transcription complex subunit 7 OS=Caenor... [more]
CAF1A_ARATH6.760e-2533.66Probable CCR4-associated factor 1 homolog 1 OS=Ara... [more]
CAF1E_ARATH1.459e-1933.00Probable CCR4-associated factor 1 homolog 5 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM3AG10RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY306002 ID=DY306002; Name=DY306002; organism=Citrus sinensis; type=EST; length=1289bp
GCAAGCAACATCTCCGCCCACCACCAGGAAACACAATAAGCTATCGGTAT
ATCTCTATATATATATATTCCTCTATTAGAACTTTTCACAAACACCTCTC
AACTCTCAAGCAACAGCAGTTACCAGCAACAGTAAAGACTTTCAAATCTC
ACTTGCGAAGCGTCGAGCTGCAAGCTATTAGCTGACGATCATCACTCATC
ATGGGAGCTGGAGATTTTTCTACGGATTTAGATTCAAGCTCAAATTCCAG
CTCATCGAATTCGATTATAATACGCGAAGTCTGGGCGTCTAATTTGGAAT
CCGAATTCGAACTCATCAGCCAAGTCATCGATCGGTACCCTTTTATTTCC
ATGGACACCGAATTCCCCGGTCTTGTCTACCGACCCGATGTGGACCCCTC
CACCAGGCCTTACTTCCGTCAACGCAAGCCGTCCGATCACTACAAGGTTT
TGAAATCCAACGTCGACGCCTTGAACTTGATCCAGGTGGGCCTCACTCTC
TCTGACTCCTCCGGTAACTTGCCGGATTTGGGCTCCGGGGGCAACAATAA
ATTCATCTGGGAGTTCAACTTCCGGGACTTCGATGTCGCGACTGACGCCC
ACGCGCCGGATTCGATAGAGCTTCTGAGACTGCAGGGGATTGACTTTGAG
CGCAACAGGGAGGAAGGCGTTGACTCGGTTCGGTTCGCCGAGTTGATGAT
GTCGTCGGGACTCGTCTGTAACGAGTCGGTGAGTTGGGTCACGTTCCACA
GCGCGTACGATTTCGGGTACCTGGTTAAGATCCTCACGCGCCGGAGCTTG
CCCAGTGGGCTAGACGAGTTTTTGACGGTCTTCAGGGTGTTTTTCGGGAA
CAACATTTATGAGGTCAAAACATTAAGGCGGGTCTGGCAAAGCTGGGTAC
GGGGGGCGGGACCCAGTGGCTCGGAAGTTGGATGGGAACCCGGGCGGTCG
GGAAATTGGCCACCAGCCGGGGTCGGATACCCTTTCGAACTGGGAAGGCC
TTTCCAAAAATTAAGGGGGGGGGTTTTCCCTCCACACAAGGAAAGCGAAA
AAGCCAGGGCGGCGTAATAAAAAGGGGAAAAAAAAAGTGGTTTAAATTTT
AATTTTGGGCCCAAATTTTTTTTTTTTTTTGTATTTTTTTTAAAAAAAAA
AAAAAAAAAAAACCCCTGGGGGGGGGGGGGGGCGGCGGGAACCCGCGATA
TTTTCTCCCCCCTAAAGGGGGAGGGGGGTTGTAATAATATATAAAAATGA
TGATAGGGGGGGCAGGCGGGGTCGTTCCTGTGTTTATTA
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