DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_JANSC (NADH-quinone oxidoreductase subunit N OS=Jannaschia sp. (strain CCS1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.863e-20
Identity = 52/102 (50.98%), Postives = 70/102 (68.63%), Query Frame = 3
Query:  429 DNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            D F+ F +I +LLS A  + +  D+  +     FEF VLI+L+   M+ M+SA DLIA+Y+ +ELQSL  YV+AA +R S  STEAGLKY +LGA SSG+LL
Sbjct:   71 DAFSRFAKITILLSAAAILMISQDYMAKADLLRFEFPVLIILAVVGMMIMVSAGDLIALYMGLELQSLALYVVAAMRRDSVRSTEAGLKYFVLGALSSGLLL 172          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_MAGSA (NADH-quinone oxidoreductase subunit N OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.046e-20
Identity = 50/109 (45.87%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N  F  D F  F + L+L+++A   +M   + E+E+   FE+ VL+L +T  M+ MISA D IA+YL +ELQSL  YV+AA  R +  +TEAGLKY +LG+ +SG+LL
Sbjct:   64 FNGLFVADRFAGFAKGLVLVASAIATAMSLPYLEREKIGRFEYPVLVLFATLGMMMMISANDFIALYLGLELQSLALYVLAAYNRDNARATEAGLKYFVLGSLASGLLL 172          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_METNO (NADH-quinone oxidoreductase subunit N OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=nuoN PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.221e-19
Identity = 52/109 (47.71%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N  F  D F    + L L+ +   + +  D F +ER + FE+ +LI+LS+  ML M SA DLI +YL +ELQSL  YVIA+  R    STEAGLKY +LGA SSG+LL
Sbjct:   69 FNGSFIVDGFARVMKTLTLVGSLAALLLARDLFARERIERFEYPILIVLSSIGMLIMASANDLIGLYLGLELQSLAAYVIASFHRDDVRSTEAGLKYFVLGALSSGMLL 177          

HSP 2 Score: 22.3274 bits (46), Expect = 1.221e-19
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHF 780
            +G S++YG TG+  F
Sbjct:  178 YGASLVYGFTGSVSF 192          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON1_RHIME (NADH-quinone oxidoreductase subunit N 1 OS=Rhizobium meliloti GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.468e-19
Identity = 52/105 (49.52%), Postives = 69/105 (65.71%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F  D F  F ++L L+ +   + M        + D FEF VL++L+T  ML MISA DLI++YL++ELQSL  YV+AA  R S  STEAGLKY +LGA SSG++L
Sbjct:   70 FLSDPFAKFMKVLALIGSITVMVMTVGHARSAQIDRFEFPVLLVLATLGMLLMISANDLISLYLSLELQSLALYVVAAINRDSVRSTEAGLKYFVLGALSSGMML 174          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_ERYLH (NADH-quinone oxidoreductase subunit N OS=Erythrobacter litoralis (strain HTCC2594) GN=nuoN PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.587e-19
Identity = 48/105 (45.71%), Postives = 67/105 (63.81%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F  D+F  F +IL+ LS  G + +   FF++ +    E+ VL+LL+T  M  M+SA DLI +Y+ +EL SL  YV+A+  R    S EAGLKY +LGA +SGILL
Sbjct:   73 FLADSFASFAKILIYLSAIGCLMIAPAFFDRLKAMRPEYPVLVLLATLGMSIMVSAGDLITLYIGLELNSLAAYVLASFLRNDTRSAEAGLKYFVLGALASGILL 177          

HSP 2 Score: 29.261 bits (64), Expect = 1.587e-19
Identity = 15/37 (40.54%), Postives = 20/37 (54.05%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG*QITGARSIVNFI 846
            +G S++YG TG T F  +   L G   TGA   V F+
Sbjct:  178 YGMSLVYGFTGTTDFEGVRGALTGDMSTGALFGVIFV 214          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_RHOCA (NADH-quinone oxidoreductase subunit N OS=Rhodobacter capsulatus GN=nuoN PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 2.504e-19
Identity = 46/109 (42.20%), Postives = 73/109 (66.97%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +   F  D F  F ++++L+S A  ++M  D+  +     FE+ +LI+L+   M+ M+SA DL+++Y+ +ELQSL  YV+AA +R S  S+EAGLKY +LG+ SSG+LL
Sbjct:   63 FGGLFIADGFARFSKVVILVSAAAVLAMSSDYMGRRGLLRFEYPILIVLAVVGMMMMVSAGDLMSLYIGLELQSLALYVVAALRRDSAVSSEAGLKYFVLGSLSSGLLL 171          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_RHORT (NADH-quinone oxidoreductase subunit N OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoN PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 5.579e-19
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            L +   F  D F  + + L LL    T+ +   + ++E    FEF +L+L +T  M+ MISA DLIA+Y+ +ELQSL  YVIAA +R +  STEAGLKY +LGA +SG+LL
Sbjct:   65 LAFGGLFIDDGFARYAKALTLLGAVLTLLLSMVWLKRENEGRFEFPILVLFATIGMMMMISANDLIALYMGLELQSLALYVIAAYQRDNLKSTEAGLKYFVLGALASGLLL 175          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_BEII9 (NADH-quinone oxidoreductase subunit N OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=nuoN PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 7.286e-19
Identity = 52/111 (46.85%), Postives = 73/111 (65.77%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            + ++  F  D F  F ++L+L+ +  ++ M   +  +E+ D FEF +LILLST  ML +ISA  LIA+YL +EL SL  YVIAA  R    ++EAGLKY +LGA SSG+LL
Sbjct:   63 VLFDGSFIDDAFGRFMKVLVLIGSLVSLIMGQTYLAREKIDKFEFPILILLSTLGMLMLISATGLIALYLGLELMSLALYVIAAFHRDDVKASEAGLKYFVLGALSSGMLL 173          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON1_ACICJ (NADH-quinone oxidoreductase subunit N 1 OS=Acidiphilium cryptum (strain JF-5) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.713e-18
Identity = 44/109 (40.37%), Postives = 68/109 (62.39%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++  ++ ++FT F  +L+ L   G +++   F        FEF VL+L +   M+ ++SA DLI +Y+  E+QSL  YV+AA  R +  S+EAGLKY +LGA SSG+LL
Sbjct:   59 FHGLYQTNDFTRFADVLVALGAIGALALSVTFNRNIGITRFEFPVLVLFAVTGMVVLVSASDLITLYIGFEIQSLALYVLAAFARHNLRSSEAGLKYFVLGALSSGLLL 167          

HSP 2 Score: 24.2534 bits (51), Expect = 3.713e-18
Identity = 10/37 (27.03%), Postives = 17/37 (45.95%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG*QITGARSIVNFI 846
            +G S++YG  G T+F  +   L G       S +  +
Sbjct:  168 YGISLVYGFAGTTNFAGIAHALAGHPTAAVGSTIGLV 204          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_AZOC5 (NADH-quinone oxidoreductase subunit N OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoN PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.374e-17
Identity = 48/102 (47.06%), Postives = 68/102 (66.67%), Query Frame = 3
Query:  429 DNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            D F  F +++ LL  A ++ M  D+  + +   FE+ VL++L++  +  +ISA DLIA+YL +EL SL  YV+AA  R S  STEAGLKY +LGA SSG+LL
Sbjct:   72 DPFARFMKVVALLGAAVSLIMSVDWLNRAQQAKFEYAVLVVLASLGICILISAGDLIALYLGLELMSLSLYVVAAINRDSVRSTEAGLKYFVLGALSSGMLL 173          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NUON_JANSC3.863e-2050.98NADH-quinone oxidoreductase subunit N OS=Jannaschi... [more]
NUON_MAGSA5.046e-2045.87NADH-quinone oxidoreductase subunit N OS=Magnetosp... [more]
NUON_METNO1.221e-1947.71NADH-quinone oxidoreductase subunit N OS=Methyloba... [more]
NUON1_RHIME1.468e-1949.52NADH-quinone oxidoreductase subunit N 1 OS=Rhizobi... [more]
NUON_ERYLH1.587e-1945.71NADH-quinone oxidoreductase subunit N OS=Erythroba... [more]
NUON_RHOCA2.504e-1942.20NADH-quinone oxidoreductase subunit N OS=Rhodobact... [more]
NUON_RHORT5.579e-1945.95NADH-quinone oxidoreductase subunit N OS=Rhodospir... [more]
NUON_BEII97.286e-1946.85NADH-quinone oxidoreductase subunit N OS=Beijerinc... [more]
NUON1_ACICJ3.713e-1840.37NADH-quinone oxidoreductase subunit N 1 OS=Acidiph... [more]
NUON_AZOC51.374e-1747.06NADH-quinone oxidoreductase subunit N OS=Azorhizob... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
back to top