DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_NICTO (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nicotiana tomentosiformis GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_NICSY (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nicotiana sylvestris GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_LEMMI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lemna minor GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_LACSA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lactuca sativa GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATIGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_GUIAB (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Guizotia abyssinica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATIGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_DAUCA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Daucus carota GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_CITSI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Citrus sinensis GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_ATRBE (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Atropa belladonna GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C_TRACE (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Trachelium caeruleum GN=ndhB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 7.303e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q+L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  S C Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQVLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSFCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_GEMAT (NADH-quinone oxidoreductase subunit N OS=Gemmatimonas aurantiaca (strain T-27 / DSM 14586 / JCM 11422 / NBRC 100505) GN=nuoN PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.051e-11
Identity = 41/104 (39.42%), Postives = 62/104 (59.62%), Query Frame = 3
Query:  429 DNFTYFCQILLLLSTAGTISMCFDFFEQERFDAF--EFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            D F +   +++LL TA  +++     E +R  AF  E   L+LL++  M+ +  A DL+ ++L +EL SL  YV+A   R+S  S EA +KY +LGA SSG LL
Sbjct:   86 DGFRWAVDLVILLGTA--LALMLLEAEHQRSAAFGPEVPSLMLLASTGMMVLAGARDLMFVFLGVELMSLAVYVLAGVNRRSARSAEAAVKYFLLGAISSGFLL 187          

HSP 2 Score: 21.1718 bits (43), Expect = 9.051e-11
Identity = 5/20 (25.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQ 795
            +G ++++G+TG+T    + +
Sbjct:  188 YGMALLFGATGSTRLQDITE 207          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NU2C1_NICTO5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_NICSY5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_LEMMI5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_LACSA5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_GUIAB5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_DAUCA5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_CITSI5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_ATRBE5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C_TRACE7.303e-1133.04NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NUON_GEMAT9.051e-1139.42NADH-quinone oxidoreductase subunit N OS=Gemmatimo... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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