DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_RUTMC (NADH-quinone oxidoreductase subunit N OS=Ruthia magnifica subsp. Calyptogena magnifica GN=nuoN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 35/111 (31.53%), Postives = 58/111 (52.25%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            + +   F  DN     ++ ++ +T   +     +         E+ VL+LLS   M+ M+S Y L+ +YL +E+ SL  Y + A  R+   + EA LKY +LGA +SG+LL
Sbjct:   68 IIFGGSFVLDNMASVFKVFMMAATMVAMVYSRHYLRTHSLFRGEYFVLVLLSVLGMMVMVSGYSLLTLYLGLEILSLSLYALIAIARERADAIEAALKYFVLGAIASGLLL 178          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_SPIOL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Spinacia oleracea GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMALTEFLLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_NYMAL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nymphaea alba GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_DIOEL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Dioscorea elephantipes GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITLFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_CARPA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Carica papaya GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_SPIOL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Spinacia oleracea GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMALTEFLLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_NYMAL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nymphaea alba GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_DIOEL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Dioscorea elephantipes GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITLFVAPECFSLCSYLLSGYTKRDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_CARPA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Carica papaya GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 9.538e-11
Identity = 39/112 (34.82%), Postives = 62/112 (55.36%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NUON_RUTMC9.538e-1131.53NADH-quinone oxidoreductase subunit N OS=Ruthia ma... [more]
NU2C2_SPIOL9.538e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_NYMAL9.538e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_DIOEL9.538e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_CARPA9.538e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_SPIOL9.538e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_NYMAL9.538e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_DIOEL9.538e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_CARPA9.538e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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