DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_MARMM (NADH-quinone oxidoreductase subunit N OS=Maricaulis maris (strain MCS10) GN=nuoN PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.331e-17
Identity = 47/109 (43.12%), Postives = 69/109 (63.30%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N+ F  D+   F +  + L  A  + +   + + E+    E+ VL++L+   M+ M+SA DLIAMY+ IELQSL  YV+AA  R S  ++EAGLKY +LGA SSG+LL
Sbjct:   68 FNDSFVFDSLARFSKTAIGLVAAIAMLLAMPYLQAEKLGKIEYPVLVVLAVTGMMMMVSANDLIAMYMGIELQSLALYVLAAFNRDSLRASEAGLKYFVLGALSSGLLL 176          

HSP 2 Score: 21.9422 bits (45), Expect = 2.331e-17
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHF 780
            +G S++YG  G+T F
Sbjct:  177 YGASLVYGFAGSTGF 191          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_PELUB (NADH-quinone oxidoreductase subunit N OS=Pelagibacter ubique GN=nuoN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.031e-17
Identity = 58/173 (33.53%), Postives = 84/173 (48.55%), Query Frame = 3
Query:  216 VFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            + PEIFI  +   LL+ GV         Y    SN+                          LF N+ +  DN + F +IL +L  A  +S+   + +  +    E+ VLIL S   M+ MIS+ DL+  Y+ +ELQSL  YV+A+  R    S+E+GLKY +L A SSG+LL
Sbjct:    7 ILPEIFISLSIMFLLLLGV---------YKKNSSNIVHNLAVGSLLITGILIFNNPLDQNISLF-NDGYVVDNLSSFMKILTILGGAFVLSISTRYLKIFKIFLIEYPVLILSSILGMMVMISSNDLMVFYIGLELQSLALYVLASFNRDQLKSSESGLKYFVLSALSSGLLL 169          

HSP 2 Score: 30.4166 bits (67), Expect = 3.031e-17
Identity = 9/23 (39.13%), Postives = 19/23 (82.61%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILN 804
            +GCS++YG +G+T+F+ +  ++N
Sbjct:  170 YGCSLVYGFSGSTNFNVIGDLMN 192          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2M_ACACA (NADH-ubiquinone oxidoreductase chain 2 OS=Acanthamoeba castellanii GN=ND2 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 4.420e-16
Identity = 66/227 (29.07%), Postives = 104/227 (45.81%), Query Frame = 3
Query:  225 EIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL--VWLFHDLWVYWSYPLPSITPDFERITNHWCS----IYC*FYWGFSLFAVRSLFKI 887
            EI+ + A    LI  V+ S  K Y     ++  G                        +  +  F+  D    F + ++L+           +    ++  FEFI+++ +S  S L ++++ DLI+++  IELQSL FY++ ASK+ S FSTE+GLKY ILG FSSGI+L  + L +      SY   ++      +TN         +  F  GF L  V  LFK+
Sbjct:   37 EIYFLLALITFLIFFVILSNKKNYRSYYYLNVGGIFSNLLPFVVILLLIILNTNTNDSYYLFAGFYYNDAAVVFFKNIILIGFLIFTFAIKQYLSYFKYYDFEFILVLFISLFSSLLILNSNDLISLFFIIELQSLTFYILVASKQTSSFSTESGLKYFILGCFSSGIILFGISLIYGFTGLLSYTDLTLFLSEVYVTNFILDSSFFSFSGFLIGFLLLTVGFLFKL 263          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_THICR (NADH-quinone oxidoreductase subunit N OS=Thiomicrospira crunogena (strain XCL-2) GN=nuoN PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.191e-15
Identity = 48/180 (26.67%), Postives = 86/180 (47.78%), Query Frame = 3
Query:  207 FLAVFPEIFIINATFILLIHGVVFSTSKK----YDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F+   PEI ++  T +LLI   ++S   +    Y    ++  VG+                        L ++  F RD F    ++++++ + G      ++  Q +F   E+  L L     M  M+SAY+LI MYL +E+ SL  Y + A ++ ++ + EA +KY +LGA ++G+LL
Sbjct:    8 FIPAIPEIVLLTLTSLLLIADTIWSKRSEFATYYATQLILLVVGYLVLTSFSTSQV-------------LTFDGSFVRDAFGDILKLVIVVVSMGIFLFSKEYLLQNKFYRGEYFTLGLFGVLGMFVMVSAYNLITMYLGLEIMSLALYAMVAMRKDNQHALEAAMKYFVLGALATGMLL 174          

HSP 2 Score: 29.261 bits (64), Expect = 1.191e-15
Identity = 11/22 (50.00%), Postives = 17/22 (77.27%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQIL 801
            +G SMIYG+TG+  F ++ QI+
Sbjct:  175 YGFSMIYGATGSIQFDEMAQII 196          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_MAGSM (NADH-quinone oxidoreductase subunit N OS=Magnetococcus sp. (strain MC-1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.612e-15
Identity = 44/109 (40.37%), Postives = 64/109 (58.72%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +   F  D F  F +++L LST   + + + + E+ +    E+ VL L +    +FMIS+   + +YL IEL SL  YV+AA KR    S EAGLKY +LG+ +SGILL
Sbjct:   69 FGGMFVNDRFAAFMKVMLYLSTLLPMVVSWVYLEKSKLGNGEYFVLTLFAMLGGMFMISSGSFLVLYLGIELLSLAIYVLAAYKRDDLASNEAGLKYFVLGSMASGILL 177          

HSP 2 Score: 22.3274 bits (46), Expect = 2.612e-15
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHF 780
            +G S+IYG TG+  F
Sbjct:  178 YGISLIYGVTGSVDF 192          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON2_ACIBL (NADH-quinone oxidoreductase subunit N 2 OS=Acidobacteria bacterium (strain Ellin345) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-15
Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 3
Query:  405 FWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            FW      D+F+ F  +L+ L TA  + + F++ + +R  + E+  +IL S   M+ M SA +L+ +++A+E+ S+  YV+AA +R+   S E+ LKY +LG+F++   L
Sbjct:   78 FWG-MVHVDSFSLFFHVLIALITAAVLLVSFEYMDVQRMRSGEYYAIILFSALGMMLMTSATELVLIFIALEISSIGSYVLAAMRRRVAESAESSLKYFLLGSFATAFFL 186          

HSP 2 Score: 25.0238 bits (53), Expect = 5.729e-15
Identity = 8/29 (27.59%), Postives = 19/29 (65.52%), Query Frame = 1
Query:  715 FPLEYYWFGCSMIYGSTGATHFHQLPQIL 801
            F   ++ +G ++I+G+TG+T+ + +   L
Sbjct:  180 FATAFFLYGVALIFGATGSTNVYTIAAAL 208          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_CAUSK (NADH-quinone oxidoreductase subunit N OS=Caulobacter sp. (strain K31) GN=nuoN PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 5.732e-15
Identity = 43/109 (39.45%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N  +  D    + ++ + LS+A  I +   +        FE+ VL++L+   M    SA DLI++Y+ +ELQSL  YV+AA +R    S+EAGLKY +LGA SSG+LL
Sbjct:   61 FNGVYAADAAATYAKVAIYLSSAVAIVLGDRWLAVRGDQKFEYAVLVILAAVGMGVTASAGDLISLYIGVELQSLALYVLAAFRRDDAKSSEAGLKYFVLGALSSGLLL 169          

HSP 2 Score: 23.483 bits (49), Expect = 5.732e-15
Identity = 8/21 (38.10%), Postives = 13/21 (61.90%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQI 798
            +G S+IYG  G+T F  +  +
Sbjct:  170 YGASLIYGFAGSTRFADIAAV 190          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_SPHWW (NADH-quinone oxidoreductase subunit N OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=nuoN PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.857e-14
Identity = 45/110 (40.91%), Postives = 70/110 (63.64%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFD-AFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++  +  D+F  F ++L+ ++ A ++++   FF +       E+ VLILLS   M  M+SA DL+ +Y+ +ELQSL  YV+A+  R+   S EAGLKY +LGA +SGILL
Sbjct:   64 FDGLYIADSFAAFAKLLIYIAAAVSVAVAPGFFSRTGGGYRAEYPVLILLSGVGMGMMVSAGDLLTLYVGLELQSLSAYVLASFMRRDTRSAEAGLKYFVLGALASGILL 173          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_GRABC (NADH-quinone oxidoreductase subunit N OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=nuoN PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.168e-14
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F  D F    ++L+L   +  + +  D+      + FEF VL L ST  M+ M+SA + + +Y+ +EL SL  YV+AA  R    S EAGLKY +LG+ +SG+LL
Sbjct:   63 FVADPFAVMVKLLILSGASIAVVLSLDYNRHHGMERFEFPVLTLFSTVGMMVMVSASNFMTLYMGLELMSLAIYVLAAFARDELRSAEAGLKYFVLGSLASGLLL 167          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_SALRD (NADH-quinone oxidoreductase subunit N OS=Salinibacter ruber (strain DSM 13855) GN=nuoN PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 4.137e-14
Identity = 48/157 (30.57%), Postives = 80/157 (50.96%), Query Frame = 3
Query:  423 RRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWLFHDLWVYWSYPLPSITPDFERITNHWCSIYC*FYWGFSLFAVRSLFKITA 893
            R   F  F  +++LL+   TI +   +  Q R+D  E   LI+  T  M+ + SA ++++++L +E  S+C YV+    R+ E + E+ LKY +LGAFS+G  L  +        +  LP++            S    F+ GF+LF V   FK++A
Sbjct:   75 RTGGFVAFINLIILLTGLATILLSVPYLNQLRYDYGEVYALIMFCTVGMIMLGSANNMVSIFLGLETMSVCLYVLTGFIREDEGAVESALKYFLLGAFSTGFFLYGIALMYGATGTMALPAMA----AAELGTLSTRLLFWGGFALFLVGFFFKVSA 227          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NUON_MARMM2.331e-1743.12NADH-quinone oxidoreductase subunit N OS=Maricauli... [more]
NUON_PELUB3.031e-1733.53NADH-quinone oxidoreductase subunit N OS=Pelagibac... [more]
NU2M_ACACA4.420e-1629.07NADH-ubiquinone oxidoreductase chain 2 OS=Acantham... [more]
NUON_THICR1.191e-1526.67NADH-quinone oxidoreductase subunit N OS=Thiomicro... [more]
NUON_MAGSM2.612e-1540.37NADH-quinone oxidoreductase subunit N OS=Magnetoco... [more]
NUON2_ACIBL5.729e-1533.64NADH-quinone oxidoreductase subunit N 2 OS=Acidoba... [more]
NUON_CAUSK5.732e-1539.45NADH-quinone oxidoreductase subunit N OS=Caulobact... [more]
NUON_SPHWW1.857e-1440.91NADH-quinone oxidoreductase subunit N OS=Sphingomo... [more]
NUON_GRABC3.168e-1439.05NADH-quinone oxidoreductase subunit N OS=Granuliba... [more]
NUON_SALRD4.137e-1430.57NADH-quinone oxidoreductase subunit N OS=Salinibac... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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