DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_LEPIN (NADH-quinone oxidoreductase subunit N OS=Leptospira interrogans GN=nuoN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.058e-12
Identity = 33/100 (33.00%), Postives = 58/100 (58.00%), Query Frame = 3
Query:  438 TYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV 737
            +++  ++ +    GT ++     +  + +  EF  L+L +TC M  M +  D I +++A+EL S+C Y++    R   FS EA LKY +LG+FSSG +L+
Sbjct:   99 SFWLNLIYISMAIGTAAIVPRILKNHKIEFPEFYPLLLFATCGMTLMTTGQDFILVFVALELMSICLYILIGMARSDLFSLEATLKYFLLGSFSSGFMLM 198          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_EHRCJ (NADH-quinone oxidoreductase subunit N OS=Ehrlichia canis (strain Jake) GN=nuoN PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.058e-12
Identity = 46/179 (25.70%), Postives = 91/179 (50.84%), Query Frame = 3
Query:  198 FNLFLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N F+ + PE+F+++++ ILL+ G+V +  K      L+S +                          L +N   + D +    +I++LLS++   S+ F      +   +EF ++IL +   ++ +I+A  L++ YL+ E+QS+  Y +    + +  S+E+G+KY +L A SS I+L
Sbjct:    3 WNNFVYIIPEVFLVSSSLILLLLGIVLN-KKVIHVLSLISLL-----------VTVGIVGINLEIEPQLIFNGLLKSDLYISIAKIIILLSSS---SVLFMLLVSGKEYCYEFSIMILFAVFGLITLIAANSLLSFYLSFEIQSITLYALTCFDKSAIKSSESGIKYFVLSALSSCIML 166          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_LOTJA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Lotus japonicus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.058e-12
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LLS+   I +  ++ E       EF++ +L +T   +F+ SA DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLSSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCSANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_LOTJA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Lotus japonicus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 5.058e-12
Identity = 40/112 (35.71%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LLS+   I +  ++ E       EF++ +L +T   +F+ SA DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLSSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCSANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON1_THEYD (NADH-quinone oxidoreductase subunit N 1 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 6.605e-12
Identity = 47/160 (29.38%), Postives = 82/160 (51.25%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWLFHDLWVYWSYPLPSITPDFERITNHWCSIYC*FYWGFSLFAVRSLFKI 887
            +N  F  D  T + ++++++ T  ++ +   + +++     E I  IL S   M+ ++SA +LI+ +L+ EL SL  YV+   +R    S EA +KY +LG FSS I+   LF   ++Y +     ++   + I+N+   I      G  LF V   FKI
Sbjct:   62 FNGMFLNDFLTIYLKLIIIIGTIISLLVLTSYLKEKLIRFNESIAFILFSALGMMLLVSARELISFFLSFELMSLSIYVLVGIRRYDVKSNEAAVKYFMLGGFSSAIM---LFGIAFIYGATNTTELSLILKVISNYNPLILI----GLGLFIVGLCFKI 214          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_AZOSB (NADH-quinone oxidoreductase subunit N OS=Azoarcus sp. (strain BH72) GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.676e-12
Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++N F  D      ++L+  S A  +     +    + D  E+ VL LL T  M+ M+++  L++MY+ +EL SL  Y + A  R S   TEA +KY +LGA +SG+LL
Sbjct:   66 FSNMFIGDLLGDVLKLLIYFSMAVALLYGRSYLADRKLDKPEYYVLALLMTLGMMVMVTSNHLLSMYIGLELMSLSLYALVAFDRDSARGTEAAMKYFVLGALASGLLL 174          

HSP 2 Score: 21.557 bits (44), Expect = 6.676e-12
Identity = 7/11 (63.64%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  736 FGCSMIYGSTG 768
            +G SM+YG+TG
Sbjct:  175 YGMSMLYGATG 185          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_DECAR (NADH-quinone oxidoreductase subunit N OS=Dechloromonas aromatica (strain RCB) GN=nuoN PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 8.665e-12
Identity = 36/100 (36.00%), Postives = 57/100 (57.00%), Query Frame = 3
Query:  435 FTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F Y   ++++  + G +       ++E  +  E+ VL L +T  M+ MISA   + +Y+ +EL SL  Y + A  R S  STEA +KY +LGA +SG+LL
Sbjct:   84 FLYMTVVIVMFYSRGYV------IDRESMNKGEYYVLALFATLGMMVMISANHFLTIYIGLELLSLSLYAMVAMNRDSVVSTEAAMKYFVLGALASGLLL 177          

HSP 2 Score: 23.483 bits (49), Expect = 8.665e-12
Identity = 10/24 (41.67%), Postives = 14/24 (58.33%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG 807
            +G SMIYG+TG      + + L G
Sbjct:  178 YGMSMIYGATGTLEITGIAERLYG 201          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C_STAPU (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Staurastrum punctulatum GN=ndhB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 39/112 (34.82%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ D FT   + LL LS+A  I +  ++  +      EF++L+L +T   +F+  A DL+ +++++E  SL  Y++A   +K   S EA LKYL++G  SS IL+    WL+
Sbjct:   74 FQVDGFTIAFRCLLTLSSALCIPLSTEYIRRSGMTQAEFLILLLTATLGGMFLCGANDLVTIFVSLECLSLSSYLLAGQAKKDIRSNEASLKYLLMGGASSSILVYGFSWLY 185          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C_CYAP8 (NAD(P)H-quinone oxidoreductase subunit 2 OS=Cyanothece sp. (strain PCC 8801) GN=ndhB PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 3
Query:  414 NFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            N F  DN +   + ++ LSTA TI M   + EQ      EFI ++L +T   +F+  A +L+ +++++E+ S+  Y++    ++   S EA LKYL++GA SS I L
Sbjct:   73 NSFNSDNLSIVFRAIIALSTAVTILMSIRYVEQTGTSLAEFIAIMLTATLGGMFLCGANELVMIFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGASSSAIFL 179          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_TOBAC (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana tabacum GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVYGFSWLY 202          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NUON_LEPIN5.058e-1233.00NADH-quinone oxidoreductase subunit N OS=Leptospir... [more]
NUON_EHRCJ5.058e-1225.70NADH-quinone oxidoreductase subunit N OS=Ehrlichia... [more]
NU2C2_LOTJA5.058e-1235.71NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_LOTJA5.058e-1235.71NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON1_THEYD6.605e-1229.38NADH-quinone oxidoreductase subunit N 1 OS=Thermod... [more]
NUON_AZOSB6.676e-1234.86NADH-quinone oxidoreductase subunit N OS=Azoarcus ... [more]
NUON_DECAR8.665e-1236.00NADH-quinone oxidoreductase subunit N OS=Dechlorom... [more]
NU2C_STAPU1.127e-1134.82NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C_CYAP81.127e-1134.58NAD(P)H-quinone oxidoreductase subunit 2 OS=Cyanot... [more]
NU2C2_TOBAC1.127e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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