DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_ARATH (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Arabidopsis thaliana GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A+E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_TOBAC (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Nicotiana tabacum GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 38/112 (33.93%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_ARATH (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Arabidopsis thaliana GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.127e-11
Identity = 39/112 (34.82%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A+E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_XANC5 (NADH-quinone oxidoreductase subunit N OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.461e-11
Identity = 35/109 (32.11%), Postives = 62/109 (56.88%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N  F RD      + +++L +  ++   + +  +      E  VL+L +T  M+ + SA  L+ +YL +EL +LC Y + AS R +  +TEA +KY +LG+ +SG+LL
Sbjct:   72 FNGMFVRDTAADVMKTVIVLVSGLSLVYGWTYLRERNLYQGEIPVLVLFATAGMMLLASAGSLLMVYLGLELLALCSYALVASNRDNGLATEAAMKYFVLGSLASGLLL 180          

HSP 2 Score: 21.1718 bits (43), Expect = 1.461e-11
Identity = 7/24 (29.17%), Postives = 13/24 (54.17%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG 807
            +G S++YG+TG      +   + G
Sbjct:  181 YGMSLVYGATGTLSLAGIHDAIEG 204          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_COXBU (NADH-quinone oxidoreductase subunit N OS=Coxiella burnetii GN=nuoN PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.472e-11
Identity = 45/176 (25.57%), Postives = 83/176 (47.16%), Query Frame = 3
Query:  207 FLAVFPEIFIINATFILLIHGVVFSTSKKYDYPPLVSNVGWXXXXXXXXXXXXXXXXXXXXXXXHLFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F+   PE+F++    ++L+ GV     K++  P  ++ +                         H    + F  D F+ + ++ + LS         ++ ++ +    EF VL LLS   M+ ++S+ +L+ ++L +EL SL  Y + A  R    S EAG+KY ++GA +SG+LL
Sbjct:    8 FIPAVPEMFVLFMALVILLAGVFIK--KRHQIPYYLTQITLILVAGLTWYIFTYSDFAETSFTFH----HMFVLDRFSVYLKLFIYLSVFFAFIYAREYNDERKIPHTEFYVLGLLSMLGMVALVSSSNLLTVFLGLELLSLPTYAMVALYRNKTRSVEAGMKYFVIGAIASGMLL 177          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON2_ROSCS (NADH-quinone oxidoreductase subunit N 2 OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.895e-11
Identity = 33/109 (30.28%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++   R D+++     L L + A T+ +  D+  ++  +  E+ VL+L +T  M+ +    DLI ++L +EL S+  YV+         S EAG+KYL++GAF+ G ++
Sbjct:   74 FSGMLRLDSYSLTLNWLFLAAAAITMVLSLDYLPRQGIERSEYYVLVLFATGGMMLLAQGADLIILFLGLELLSIVLYVLTGFAYPRNASEEAGMKYLLIGAFAGGFVV 182          

HSP 2 Score: 22.3274 bits (46), Expect = 1.895e-11
Identity = 7/22 (31.82%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQIL 801
            FG +++YG+TG+ +   + + L
Sbjct:  183 FGIALLYGATGSMNLRAIGETL 204          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_LEGPL (NADH-quinone oxidoreductase subunit N OS=Legionella pneumophila (strain Lens) GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.897e-11
Identity = 32/111 (28.83%), Postives = 65/111 (58.56%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            L +N  F  D+ ++  ++ + ++   +     ++ ++ +    ++ VL L ST  M+ ++SA+ L+ +YL +EL SL  Y + A +R    ++EA +KY ++GA +SG+LL
Sbjct:   64 LIFNKLFISDDISHLMKLFIDITVLLSFVYSQNYLDERQMPTGDYYVLGLFSTLGMMILVSAHSLLTLYLGLELMSLPLYAMTAIRRTDSDASEAAMKYFVMGAIASGMLL 174          

HSP 2 Score: 20.7866 bits (42), Expect = 1.897e-11
Identity = 6/11 (54.55%), Postives = 10/11 (90.91%), Query Frame = 1
Query:  736 FGCSMIYGSTG 768
            +G S++YG+TG
Sbjct:  175 YGISLVYGATG 185          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_SACHY (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Saccharum hybrid GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.922e-11
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL++   WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVLGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_SACHY (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Saccharum hybrid GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.922e-11
Identity = 37/112 (33.04%), Postives = 65/112 (58.04%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL++   WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVLGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_BORA1 (NADH-quinone oxidoreductase subunit N OS=Bordetella avium (strain 197N) GN=nuoN PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.461e-11
Identity = 37/110 (33.64%), Postives = 62/110 (56.36%), Query Frame = 3
Query:  408 WNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFE-QERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            +N  +  D+F++  +I   ++ A T+     + + ++     E  VL LL+    + MISA  L+++YL +EL SL  Y + A +R    +TEA +KY +LGA +SG LL
Sbjct:   67 FNGMYVTDSFSHLLKITSYIAVAVTLIYGRVYAQSRDMLRGGELYVLTLLALLGQMVMISAGSLVSVYLGLELMSLALYALIALRRDDVVATEAAMKYFVLGALASGFLL 176          

HSP 2 Score: 24.6386 bits (52), Expect = 2.461e-11
Identity = 9/26 (34.62%), Postives = 16/26 (61.54%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILNG*Q 813
            +G SM+YGSTG     ++ +++   Q
Sbjct:  177 YGMSMVYGSTGHLDLAEISRVIGSGQ 202          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NU2C2_ARATH1.127e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_TOBAC1.127e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_ARATH1.127e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON_XANC51.461e-1132.11NADH-quinone oxidoreductase subunit N OS=Xanthomon... [more]
NUON_COXBU1.472e-1125.57NADH-quinone oxidoreductase subunit N OS=Coxiella ... [more]
NUON2_ROSCS1.895e-1130.28NADH-quinone oxidoreductase subunit N 2 OS=Roseifl... [more]
NUON_LEGPL1.897e-1128.83NADH-quinone oxidoreductase subunit N OS=Legionell... [more]
NU2C2_SACHY1.922e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_SACHY1.922e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON_BORA12.461e-1133.64NADH-quinone oxidoreductase subunit N OS=Bordetell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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