DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_MOOTA (NADH-quinone oxidoreductase subunit N OS=Moorella thermoacetica (strain ATCC 39073) GN=nuoN PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.510e-11
Identity = 36/105 (34.29%), Postives = 64/105 (60.95%), Query Frame = 3
Query:  429 DNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLVWL 743
            D F  + +IL L++   T +  +D+ E+   +  E+  L++L+T  M+ + S+ +L+++YL +EL ++ F ++AA       S EAG+KY++LGA SS I L  L
Sbjct:   67 DPFGTYFKILFLVAAMLTAACSYDYVEKMGLNQGEYYALLVLATLGMMVLASSGELVSLYLGLELMTITFCILAAFHLGDAKSAEAGIKYVLLGAMSSAIFLYGL 171          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON1_HERA2 (NADH-quinone oxidoreductase subunit N 1 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.510e-11
Identity = 34/102 (33.33%), Postives = 57/102 (55.88%), Query Frame = 3
Query:  429 DNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            D F      +LL  TA T+ + FD+  ++     EF  L+L +T  MLF++ + DL+ +++ +E  S+  YV+         S EA +KYL+LG F++G L+
Sbjct:   75 DKFGVLVNWILLAGTALTLLIAFDYMPRQNLSQGEFYPLVLFATSGMLFLVQSTDLVTIFIGVETLSIALYVLTGFAVPQFKSGEAAIKYLLLGGFAAGFLV 176          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic OS=Physcomitrella patens GN=ndhB PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.510e-11
Identity = 37/112 (33.04%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGIL---LVWLF 746
            F+ DNF    +I + L +   I +  DF +  +    EF++ +L +T   +F+  A DLI +++++E  SLC Y+++   +K   S EA +KYL++G  SS IL     WL+
Sbjct:   74 FQADNFNKIFRIFIALCSILCIPLSIDFIKCTKLAITEFLIFLLTATIGGMFLCGANDLITIFVSLECLSLCSYLLSGYTKKDVRSNEAVMKYLLIGGTSSSILAYGFSWLY 185          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_SOYBN (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Glycine max GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.510e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A+E  SLC Y+++   +K   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_SOYBN (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Glycine max GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.510e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A+E  SLC Y+++   +K   S EA  KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON2_THEYD (NADH-quinone oxidoreductase subunit N 2 OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=nuoN2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 41/110 (37.27%), Postives = 60/110 (54.55%), Query Frame = 3
Query:  405 FWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F +   + D +    +IL+L      I + +   + +   + E++ L+LLS   M  MI A DL+ +YLA+E  SL  Y++A   RK   S EAG+KY ILG  SS ILL
Sbjct:   57 FTSELIKIDLYRQTLRILVLFIGVFIIGLSYSDLKLKSSKSVEYVFLLLLSLFGMNLMIVANDLLILYLALETFSLSLYILAGFYRKESLSIEAGMKYFILGTLSSIILL 166          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_ORYSI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oryza sativa subsp. indica GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_ORYSA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oryza sativa GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_MAIZE (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Zea mays GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NUON_MOOTA2.510e-1134.29NADH-quinone oxidoreductase subunit N OS=Moorella ... [more]
NUON1_HERA22.510e-1133.33NADH-quinone oxidoreductase subunit N 1 OS=Herpeto... [more]
NU2C_PHYPA2.510e-1133.04NAD(P)H-quinone oxidoreductase subunit 2, chloropl... [more]
NU2C2_SOYBN2.510e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_SOYBN2.510e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON2_THEYD3.278e-1137.27NADH-quinone oxidoreductase subunit N 2 OS=Thermod... [more]
NU2C2_ORYSJ3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_ORYSI3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_ORYSA3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_MAIZE3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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