DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_HORVU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Hordeum vulgare GN=ndhB2 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_ORYSI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oryza sativa subsp. indica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_ORYSA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oryza sativa GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_MAIZE (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Zea mays GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_HORVU (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Hordeum vulgare GN=ndhB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.278e-11
Identity = 37/112 (33.04%), Postives = 64/112 (57.14%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILLV---WLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A+E  SLC Y+++   ++   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVALECFSLCSYLLSGYTKRDLRSNEATMKYLLMGGASSSILVYGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_CHLSY (NADH-quinone oxidoreductase subunit N OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=nuoN PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 40/105 (38.10%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F  D+ T   ++L++ +   T  +C D   +      EF  LI+ +T  M  M+ A +L+  YLAIEL S+  Y++A   R    S EAGLKY + GA SS ILL
Sbjct:  101 FATDHLTMIARLLIIGAALVTSLLCLDI--RPNAHPGEFYALIIFATLGMCLMVGANELLLAYLAIELTSIPLYLLAGYFRNDPRSAEAGLKYFLFGAISSAILL 203          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_OENPA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oenothera parviflora GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_OENGL (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oenothera glazioviana GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_OENEH (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NU2C2_HORVU3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_ORYSJ3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_ORYSI3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_ORYSA3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_MAIZE3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_HORVU3.278e-1133.04NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON_CHLSY4.282e-1138.10NADH-quinone oxidoreductase subunit N OS=Chlorofle... [more]
NU2C2_OENPA4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_OENGL4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_OENEH4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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