DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_OENBI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oenothera biennis GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_OENAR (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Oenothera argillicola GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_HELAN (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Helianthus annuus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3 
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATIGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_EUCGG (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            + ++  F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   85 IIFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_OENPA (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oenothera parviflora GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_OENGL (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oenothera glazioviana GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_OENEH (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oenothera elata subsp. hookeri GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_OENBI (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oenothera biennis GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_OENAR (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Oenothera argillicola GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 41/118 (34.75%), Postives = 66/118 (55.93%), Query Frame = 3 
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            LF  NF + +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   86 LFSGNF-QTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
[Close]
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_HELAN (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Helianthus annuus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = 3 
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ IL +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFILTATIGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NU2C2_OENBI4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_OENAR4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_HELAN4.282e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_EUCGG4.282e-1132.20NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C1_OENPA4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_OENGL4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_OENEH4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_OENBI4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_OENAR4.282e-1134.75NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NU2C1_HELAN4.282e-1134.82NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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