DY305936

Overview
NameDY305936
Unique NameDY305936
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1295
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY305936_ssr954 microsatellite DY305936_ssr954:954..965. BLAST: Citrus ESTs to TAIR9
Csv1_Contig6784 contig Csv1_Contig6784:1..1295. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C1_EUCGG (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.282e-11
Identity = 38/118 (32.20%), Postives = 66/118 (55.93%), Query Frame = 3
Query:  402 LFWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            + ++  F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   85 IIFSGNFQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NUON_FLAPJ (NADH-quinone oxidoreductase subunit N OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=nuoN PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 5.396e-11
Identity = 31/110 (28.18%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  405 FWNNFFRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            ++NN    D F+     L ++ T   +++  +F+++++    +++ + +      + M+S  +L   +L IE+ S+  Y++AAS R +  S EAG+KY ++G+F+SGI+L
Sbjct:   51 YYNNMMVVDKFSVAFSSLFIIITVFLVALSHEFYKEQKTKISDYVGIKVFLLSGAVAMVSFGNLSMFFLGIEVLSISLYILAASNRLNLKSNEAGMKYFLMGSFASGIIL 160          

HSP 2 Score: 22.7126 bits (47), Expect = 5.396e-11
Identity = 8/23 (34.78%), Postives = 16/23 (69.57%), Query Frame = 1
Query:  736 FGCSMIYGSTGATHFHQLPQILN 804
            FG  +IYG+TG+   +++  ++N
Sbjct:  161 FGICLIYGATGSFDLNKILILIN 183          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2M_METSE (NADH-ubiquinone oxidoreductase chain 2 OS=Metridium senile GN=ND2 PE=3 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 5.425e-11
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  540 VLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            VL+L+     + ++SA + +++YLAIEL +L  +++ A KR S FS EAGLKY +LGA +SG+ L
Sbjct:   13 VLVLMVALGSILLVSASNWLSVYLAIELPTLSLFILVAQKRGSGFSAEAGLKYFVLGALASGLFL 77          

HSP 2 Score: 24.2534 bits (51), Expect = 5.425e-11
Identity = 9/25 (36.00%), Postives = 15/25 (60.00%), Query Frame = 1
Query:  730 YWFGCSMIYGSTGATHFHQLPQILN 804
            + FGC+++ G TG T    +  +LN
Sbjct:   76 FLFGCALLCGLTGGTSIPCIDLVLN 100          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C_MICAN (NAD(P)H-quinone oxidoreductase subunit 2 OS=Microcystis aeruginosa (strain NIES-843) GN=ndhB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 34/105 (32.38%), Postives = 61/105 (58.10%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL 734
            F  DN +   + ++ LSTA T+ M   + EQ      EF+ ++L +T   +F+  A +L+ +++++E+ S+  Y++    ++   S EA LKYL++GA SS I L
Sbjct:   75 FEGDNLSIVFRAIIALSTASTVLMSIRYVEQAGTSLAEFLAIMLTATLGGMFLSGASELVMIFISLEMLSISSYLMTGYMKRDPRSNEAALKYLLIGASSSAIFL 179          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_SOLTU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Solanum tuberosum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_SOLLC (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Solanum lycopersicum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_SOLBU (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Solanum bulbocastanum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_PANGI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Panax ginseng GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_NICTO (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana tomentosiformis GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
BLAST of DY305936 vs. ExPASy Swiss-Prot
Match: NU2C2_NICSY (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Nicotiana sylvestris GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 5.592e-11
Identity = 38/112 (33.93%), Postives = 63/112 (56.25%), Query Frame = 3
Query:  420 FRRDNFTYFCQILLLLSTAGTISMCFDFFEQERFDAFEFIVLILLSTCSMLFMISAYDLIAMYLAIELQSLCFYVIAASKRKSEFSTEAGLKYLILGAFSSGILL---VWLF 746
            F+ +NF    Q L+LL +   I +  ++ E       EF++ +L +T   +F+  A DLI +++A E  SLC Y+++   +K   S EA +KYL++G  SS IL+    WL+
Sbjct:   91 FQTNNFNEIFQFLILLCSTLCIPLSVEYIECTEMAITEFLLFVLTATLGGMFLCGANDLITIFVAPECFSLCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLY 202          
The following BLAST results are available for this feature:
BLAST of DY305936 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 129
Match NameE-valueIdentityDescription
NU2C1_EUCGG4.282e-1132.20NAD(P)H-quinone oxidoreductase subunit 2 A, chloro... [more]
NUON_FLAPJ5.396e-1128.18NADH-quinone oxidoreductase subunit N OS=Flavobact... [more]
NU2M_METSE5.425e-1146.15NADH-ubiquinone oxidoreductase chain 2 OS=Metridiu... [more]
NU2C_MICAN5.592e-1132.38NAD(P)H-quinone oxidoreductase subunit 2 OS=Microc... [more]
NU2C2_SOLTU5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_SOLLC5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_SOLBU5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_PANGI5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_NICTO5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]
NU2C2_NICSY5.592e-1133.93NAD(P)H-quinone oxidoreductase subunit 2 B, chloro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG09RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305936 ID=DY305936; Name=DY305936; organism=Citrus sinensis; type=EST; length=1295bp
GTCTACATTCAATTCTTTATTGAGCCTGGTGTGGAATCACCATCATTACA
CATTCATTGTTGATTTGGCTGCTGGTCTAGCGATCCTTCCTAGCCGCCGC
CTAGAGTGCAGCCTGCTTGCTGAAGACCGTAACGTAAGTAACTCAGTGCT
CCATACGGGGGAAATGAAAGCAGAATTCGTTCGGATCCTCCCACATGTTC
AATCTTTTTTTAGCGGTTTTTCCAGAGATCTTTATCATTAATGCAACCTT
TATTTTGCTCATTCATGGAGTTGTATTTAGTACCTCTAAGAAATATGATT
ATCCGCCGTTAGTCAGTAATGTGGGTTGGCTTGGATTACTTAGTGTTCTA
ATAACCTTGCTTCTGCTCGCCGCTGGCGCACCTCTCCTAACTATTGCCCA
TTTATTCTGGAATAATTTTTTTAGGAGGGACAATTTTACATATTTTTGCC
AAATCCTTCTATTATTAAGTACGGCTGGTACCATTTCGATGTGTTTTGAT
TTTTTCGAACAAGAGAGGTTTGATGCTTTTGAATTCATTGTATTAATTCT
ACTTTCTACTTGCAGTATGCTCTTTATGATCTCGGCTTATGATTTAATTG
CCATGTATTTAGCTATTGAGCTTCAAAGTTTATGTTTTTATGTAATCGCA
GCATCAAAAAGAAAGTCTGAATTTTCCACGGAAGCCGGCTTGAAATATTT
GATCTTAGGTGCATTTTCCTCTGGAATATTATTGGTTTGGTTGTTCCATG
ATCTATGGGTCTACTGGAGCTACCCACTTCCATCAATTACCCCAGATTTT
GAACGGATAACAAATCACTGGTGCTCGATCTATTGTTAATTTTATTGGGG
ATTCTCTTTATTCGCTGTAAGATCCCTATTCAAAATCACTGCCAATTCCC
TTTTCGGGCGGCTGTGAGGAAGAACGGCCCCTTATAAGTGGGGAAAGGGT
AAGGGGTGGGTGGGTACCACCCAAAATTAAAAAAAACCACACAAAATCTC
TTTGTGGGGGTCCGGGCCATCCCGGTCTCGCAGAATTAGGAATTATTTTG
TCAGTTCTATGTGATGAGTCATAATATACAAAGACGCGGGAATCAGCGTA
AAAAAAATCCATGGTTGTTGATGTCGTAATAGACNGACCATNGAAAGNGA
CAACAAGCTCTAATGTAGCAAGCTCGTCATTCAGACACAAGACTGAAGCA
TAAGAAACCACCTCAGACCATACGCATGTTGCGAGCGACGCTTCCAACCC
CAAANACGNGTCATAATGACGTGCGACGTTACGCATCCTCTGACT
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