DY305932

Overview
NameDY305932
Unique NameDY305932
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1247
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 2.290e-30
Identity = 66/168 (39.29%), Postives = 102/168 (60.71%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYIN 512
            ++ ETK I + L K+N   + T+ SQPAVNG  S     GWG  GG V+QKA++E F + + L   + K    P +T+ A N +  +  N  +   +AVTWGV+P +EIIQ T++   SFK W  E+F++W   WA+LY +   SRKLLE   +  +LV+++ +D+++
Sbjct:  463 VEVETKTIAKYLLKLNGNSWWTVGSQPAVNGAPSADPVFGWGPKGGRVFQKAFVECFVNGKDLKDFITKWHDNPQVTYYAGNNKSEFLTNAPKDGASAVTWGVYPGREIIQSTIIAEVSFKAWLSESFQVWG-EWANLYSKNTPSRKLLENCINDRWLVTVIHHDFMD 629          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 3.906e-30
Identity = 71/173 (41.04%), Postives = 102/173 (58.96%), Query Frame = 3
Query:    9 LQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEKLTALVDKSKALPFITFMAVNKEGNWKAN-VNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDS--SRKLLEEVQSSYYLVSLVDNDYINGD 518
            +  E   I   L ++N    +TINSQP VNG RS+    GWG   GYVYQK YLEF     KL  L+D  K   F+T+ A++ +G+  +N  + +  NAVTWG+FP +EI+QPT+V+  SF  WK+E + I +  W     + D   S + ++ +   Y LV++VDNDYI+ D
Sbjct:  419 INDEINPIKAHLIELNQHSIITINSQPQVNGIRSNDKIHGWGPKDGYVYQKQYLEFMLPKTKLPKLIDTLKNNEFLTYFAIDSQGDLLSNHPDNSKSNAVTWGIFPGREILQPTIVEKISFLAWKEEFYHILN-EWKLNMNKYDKPHSAQFIQSLIDDYCLVNIVDNDYISPD 590          
BLAST of DY305932 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 6.237e-28
Identity = 67/175 (38.29%), Postives = 99/175 (56.57%), Query Frame = 3
Query:    6 GLQPETKIINEQLGKINVKGFLTINSQPAVNGERSDSSSVGWGGPGGYVYQKAYLEFFCSPEK----LTALVDKSKALPFITFMAVNKEGNWKANVNQTDVNAVTWGVFPAKEIIQPTVVDPASFKVWKDEAFEIWSRSWASLYPEGDSSRKLLEEVQSSYYLVSLVDNDYINGD 518
            GL  ET +I E+L ++N +G+LT+ SQPA N   S     GWG   G +YQKA++E F   ++    L   +D      F ++ A +  G+++ N++    + VTWGVFP   + Q T+++  SFK W+DEAF IWS  WA L+P    +  LL  V   Y LVS+V +D+   D
Sbjct:  475 GLSAETALIQEELIQLNYRGYLTLASQPATNATLSSDKIFGWGPAKGRLYQKAFVEMFIHRQQWETTLKPKLDHYGRRKF-SYYAGDSSGSFETNLDPHSSSVVTWGVFPNSPVKQTTIIEEESFKAWRDEAFSIWS-EWAKLFPRNTPANILLRLVHKDYCLVSIVHHDFKETD 647          
The following BLAST results are available for this feature:
BLAST of DY305932 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
MTHR2_SCHPO2.290e-3039.29Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]
MTHR2_YEAST3.906e-3041.04Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
MTHR1_YEAST6.237e-2838.29Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG03RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305932 ID=DY305932; Name=DY305932; organism=Citrus sinensis; type=EST; length=1247bp
GAGACGGGCTTCAGCCAGAGACCAAAATCATAAATGAACAGCTTGGAAAG
ATCAATGTGAAAGGTTTCCTCACTATCAACAGCCAGCCGGCAGTCAATGG
TGAAAGATCCGATTCATCTTCTGTTGGTTGGGGTGGGCCAGGAGGATATG
TTTATCAGAAAGCATATCTAGAGTTTTTCTGCTCACCAGAGAAGTTGACT
GCACTTGTTGACAAAAGCAAAGCTCTTCCATTCATAACCTTCATGGCTGT
CAACAAAGAAGGGAACTGGAAAGCCAATGTTAATCAAACTGATGTGAATG
CCGTAACTTGGGGGGTCTTCCCAGCCAAGGAGATTATCCAACCGACTGTT
GTTGACCCTGCCAGCTTCAAGGTGTGGAAGGATGAGGCATTCGAAATTTG
GTCAAGATCATGGGCTTCATTGTACCCCGAGGGAGACTCATCAAGAAAAT
TGCTCGAAGAGGTGCAGAGCAGCTATTATTTGGTCAGCTTGGTGGATAAT
GATTACATCAATGGGGATCTTTTTACTGTTTTTGCCGATCTCTAGGTTAA
GCTGCTGTACTCCATGGAATTACAACCTGATTTCATCAATGGTCATCTTG
TACCCTCACTGAAGCCATTTGAAGTGTTGCCTTCTCTCAAGTTAATTTCA
ATTGAAATTTATCCAAAATTACAAGCTTACTGATTGTATTAATAAGATGA
TAGGGATTTTGATACCTCCCTGATGCTCCATGCAAATTAAATTGGCAGCT
TTCATTCTATTGAATCGCTCCTAATTATTTTGTCATGGAAATTGCAATCT
GAAAATTGTAACGTTACCCAAAAATATTTATTCCAATAAAGTGAGTCTTT
TTTTTTCTGCCAAAAAAAAAAAAAAAAAAACTCCCCTCCGGCCCAAATTC
GGCACGAGGGGAAAATTGTCCCAAAATCATTTTCTAAACCCAAAAGTTAT
TGCCTAAACTAAAAAACTTTTTCCCCCCGAACCCCTTTGCAATTTAATAT
AATTCCGTTTCAATCTTTGCAAAAAATAAAAAATTGTTTCAAAGAAGTAA
AAAAAAAACCTAATCCCCCCCCCGAAGTGGGTTTTAATCTCTTGGGACCC
TTTCCCCTTTCCCCAAATTGGGTTGTTTTACCCGAAAAACAAATTTTTTG
TTTTCTCTCCCTGGGAGTGGTGGGGGGGGCCCCCCATTTTTTTGTTTGCC
GCCAAGAAGGGGGGGGGGCCCCGAAAAAAATTTTTTCTTTGGCGCTC
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