DY305930

Overview
NameDY305930
Unique NameDY305930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_HORVU (Translationally-controlled tumor protein homolog OS=Hordeum vulgare GN=TCTP PE=2 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.728e-44
Identity = 88/126 (69.84%), Postives = 96/126 (76.19%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQPAFDKKQF+ Y+KR+IK LT KL  E  + FKKN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYY+EGA DPTFLY A  LKEVKC
Sbjct:   43 VDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFIAYIKRYIKNLTAKLEGEELDAFKKNVESATKYLLSKLKDLQFFVGESMHDDGSVVFAYYREGAADPTFLYFAHGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_FRAAN (Translationally-controlled tumor protein homolog OS=Fragaria ananassa GN=TCTP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.788e-44
Identity = 94/128 (73.44%), Postives = 99/128 (77.34%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXX--KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS                 KVVDIVDTFRLQEQP FDKKQFVT++KR+IKLLTPKL  E+QE FKKNIEGATKFLLSKLSDLQFFVGESM DD  LVFA YKEGATDP F+Y A  LKEVKC
Sbjct:   43 VDIGANPSAEGADADADEGVDDQTVKVVDIVDTFRLQEQPPFDKKQFVTWVKRYIKLLTPKLEGEQQETFKKNIEGATKFLLSKLSDLQFFVGESMGDDTSLVFASYKEGATDPIFIYFAHGLKEVKC 170          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_ARATH (Translationally-controlled tumor protein homolog OS=Arabidopsis thaliana GN=TCTP PE=1 SV=2)

HSP 1 Score: 176.407 bits (446), Expect = 8.788e-44
Identity = 87/126 (69.05%), Postives = 97/126 (76.98%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            V+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKLSEE Q +FKK IEGATKFLL +LSD QFFVGE MHDD  LVFAYYKEG+T+PTFLY A  LKEVKC
Sbjct:   43 VNIGANPSAEEGGEDEGVDDSTQKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLSEEDQAVFKKGIEGATKFLLPRLSDFQFFVGEGMHDDSTLVFAYYKEGSTNPTFLYFAHGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_WHEAT (Translationally-controlled tumor protein homolog OS=Triticum aestivum GN=TCTP PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 1.958e-43
Identity = 87/126 (69.05%), Postives = 98/126 (77.78%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQPAFDKKQF+++MKR+IK L+ KL  +  ++FKKN+E ATK+LLSKL DLQFFVGESMHDDG +VFAYYKEGA DPTFLY A  LKEVKC
Sbjct:   43 VDIGANPSAEGGGDDEGVDDQAVKVVDIVDTFRLQEQPAFDKKQFISHMKRYIKNLSAKLEGDDLDVFKKNVESATKYLLSKLKDLQFFVGESMHDDGGVVFAYYKEGAADPTFLYFAHGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_PEA (Translationally-controlled tumor protein homolog OS=Pisum sativum GN=TCTP PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 4.361e-43
Identity = 88/126 (69.84%), Postives = 99/126 (78.57%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            V+IGANPS               KVVDIVD FRLQEQP FDKKQF+ ++K++IKLLTPKL  E+QE FKKNIEGATK+LL KL DLQFFVGESMHDDG LVFAYYK+GA DPTFLY + ALKE+KC
Sbjct:   43 VNIGANPSAEGGEDEGVDDTAV-KVVDIVDVFRLQEQPPFDKKQFLGFVKKYIKLLTPKLEAEKQEHFKKNIEGATKYLLGKLKDLQFFVGESMHDDGSLVFAYYKDGAADPTFLYFSFALKEIKC 167          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_BRAOL (Translationally-controlled tumor protein homolog OS=Brassica oleracea GN=TCTP PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 4.361e-43
Identity = 86/126 (68.25%), Postives = 96/126 (76.19%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            V+IGANPS               KVVDIVDTFRLQEQP +DKK F+ Y+K++IKLLTPKL+ E+QE FKK IEGATKFLL KL D QFFVGE MHDD  +VFAYYKEGAT+PTFLY A  LKEVKC
Sbjct:   43 VNIGANPSAEEGGEDEGVDDSVEKVVDIVDTFRLQEQPTYDKKGFIAYIKKYIKLLTPKLTPEQQEEFKKGIEGATKFLLPKLKDFQFFVGEGMHDDSTIVFAYYKEGATNPTFLYFAHGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_CUCME (Translationally-controlled tumor protein homolog OS=Cucumis melo GN=TCTP PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 7.698e-40
Identity = 83/126 (65.87%), Postives = 93/126 (73.81%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQP+ DKK F++ +K++IK LTP L  E+QE FK  IEGA K+LL K+ DLQFFVGESM DD  +VFAYYKEGATDPTFLYIA  LKEVKC
Sbjct:   43 VDIGANPSAEGGGEDEGVDDQAVKVVDIVDTFRLQEQPSMDKKVFLSCIKKYIKKLTPLLQGEQQEAFKNKIEGAVKYLLPKVKDLQFFVGESMADDSAMVFAYYKEGATDPTFLYIAPGLKEVKC 168          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_MAIZE (Translationally-controlled tumor protein homolog OS=Zea mays GN=TCTP PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.605e-37
Identity = 80/126 (63.49%), Postives = 92/126 (73.02%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVKC 379
            VDIGANPS               KVVDIVDTFRLQEQP FDKK FV+Y+K++IK LT  L  E+ + FKK +EGATKFLLSKL DLQFFVGESM DD  + FAYYK+GAT+ TFLY +  LKE+KC
Sbjct:   43 VDIGANPSAEGGEDESVDDTAV-KVVDIVDTFRLQEQPPFDKKSFVSYIKKYIKNLTAVLEPEKADEFKKGVEGATKFLLSKLKDLQFFVGESMKDDASVAFAYYKDGATNSTFLYFSHGLKEIKC 167          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP1_DICDI (Translationally-controlled tumor protein homolog 1 OS=Dictyostelium discoideum GN=DDB_G0282853 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.462e-14
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 2
Query:   71 KVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSEE---RQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 376
            +V+++VD  RL E  +FDKK +  Y+K ++K +  KL++    R + FKK+     K +L K  + +F+ GE+M  DG +   YYK G  DP FLY  D L+ VK
Sbjct:   70 QVINVVDAMRLVET-SFDKKSYTGYIKAYMKEVLAKLADNNPSRVDAFKKDAADFVKSVLGKFDEYKFYTGENMDADGHVALMYYKPGEVDPIFLYFKDGLESVK 173          
BLAST of DY305930 vs. ExPASy Swiss-Prot
Match: TCTP_CRYNE (Translationally-controlled tumor protein homolog OS=Cryptococcus neoformans GN=CNM01460 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.257e-14
Identity = 45/128 (35.16%), Postives = 69/128 (53.91%), Query Frame = 2
Query:    2 VDIGANPSXXXXXXXXXXXXXXXKVVDIVDTFRLQEQPAFDKKQFVTYMKRFIKLLTPKLSE---ERQEIFKKNIEGATKFLLSKLSDLQFFVGESMHDDGCLVFAYYKEGATDPTFLYIADALKEVK 376
            VDIG NPS               +V ++V +FRLQ   +FDKK ++TY+K ++K +  KL E   +R   F+K  +   K +++   D +F++GESM+ DG +    Y+E    P F    D LKE+K
Sbjct:   42 VDIGGNPSAEEAAEALEEGAQ--QVNNVVHSFRLQST-SFDKKSYLTYLKGYMKAIKSKLQESNPDRVAAFEKGAQDFAKKIVANFKDYEFYIGESMNPDGMVCLLNYREDGVTPYFTMWKDGLKEIK 166          
The following BLAST results are available for this feature:
BLAST of DY305930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
TCTP_HORVU6.728e-4469.84Translationally-controlled tumor protein homolog O... [more]
TCTP_FRAAN8.788e-4473.44Translationally-controlled tumor protein homolog O... [more]
TCTP_ARATH8.788e-4469.05Translationally-controlled tumor protein homolog O... [more]
TCTP_WHEAT1.958e-4369.05Translationally-controlled tumor protein homolog O... [more]
TCTP_PEA4.361e-4369.84Translationally-controlled tumor protein homolog O... [more]
TCTP_BRAOL4.361e-4368.25Translationally-controlled tumor protein homolog O... [more]
TCTP_CUCME7.698e-4065.87Translationally-controlled tumor protein homolog O... [more]
TCTP_MAIZE1.605e-3763.49Translationally-controlled tumor protein homolog O... [more]
TCTP1_DICDI1.462e-1439.05Translationally-controlled tumor protein homolog 1... [more]
TCTP_CRYNE3.257e-1435.16Translationally-controlled tumor protein homolog O... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DG01RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305930 ID=DY305930; Name=DY305930; organism=Citrus sinensis; type=EST; length=578bp
GGTTGACATTGGTGCAAATCCTTCTGCCGAAGGAGCTGATGAGGATGAGG
GTGTTGATGACCAAGCCGTGAAGGTGGTCGACATTGTCGACACATTCAGG
CTGCAGGAGCAACCTGCTTTTGACAAGAAGCAGTTTGTAACATACATGAA
GAGATTCATCAAGTTGCTGACGCCCAAGCTGAGTGAGGAGAGGCAGGAGA
TATTTAAGAAGAATATTGAGGGAGCGACCAAGTTCTTGCTCTCGAAGCTC
AGTGACCTTCAATTCTTTGTTGGGGAGAGCATGCATGATGATGGCTGTCT
TGTCTTTGCTTACTACAAGGAAGGTGCGACCGACCCAACATTTTTGTATA
TTGCTGATGCATTGAAGGAGGTGAAGTGCTAAGCCGGGCTTCGAAGAGGA
AGTGCCTGCTGTAGTTCTAGTTTTAATTATTGCCCGCGGTTATTTTTATG
TATCTTTTGTACTGGTTTACTCGGGACTTGTGCTTGCTGTTTTTTAGTTT
TTATTTTGACATAAACAATATGTTTTTCTGCTCCTAATTATTGGGTTTTA
TGGTTTGAGATTGAATTACCAAATAACT
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