DY305929

Overview
NameDY305929
Unique NameDY305929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1268
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: ATG8D_ORYSJ (Autophagy-related protein 8D OS=Oryza sativa subsp. japonica GN=ATG8D PE=3 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 6.821e-30
Identity = 64/118 (54.24%), Postives = 84/118 (71.19%), Query Frame = -3
Query:  241 MAKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDE-DGFLYMTYSGENTFG 591
            M    FK E  LE R  ESA +   YPDRIPVIVEK  RS++P+++K+KYLVP ++ VGQF++++R R+ LS   A+F+FV N LP TA +M ++YE  KDE DGFLY+ YS E TFG
Sbjct:    1 MKPRPFKEEFTLEERAKESAAMIASYPDRIPVIVEKFSRSNLPEMEKRKYLVPCNMPVGQFIFILRSRLHLSPGTALFVFVNNTLPQTAQLMGSVYESYKDEGDGFLYLCYSSEKTFG 118          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: ATG8H_ARATH (Autophagy-related protein 8h OS=Arabidopsis thaliana GN=ATG8H PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 2.592e-29
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = -3
Query:  241 SFKLEHPLERRQAESARIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 579
            SFK +   + R  ES  I  KYPDRIPVI+EK   +D+PD++K KYLVP D+TVG F++++ KR++L   KA+F+FV N LP TA+ M ++Y   K+EDGFLYM YS E TFG
Sbjct:    7 SFKDQFSSDERLKESNNIIAKYPDRIPVIIEKYSNADLPDMEKNKYLVPRDMTVGHFIHMLSKRMQLDPSKALFVFVHNTLPQTASRMDSLYNTFKEEDGFLYMCYSTEKTFG 119          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3C_HUMAN (Microtubule-associated proteins 1A/1B light chain 3C OS=Homo sapiens GN=MAP1LC3C PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 7.559e-21
Identity = 53/114 (46.49%), Postives = 76/114 (66.67%), Query Frame = -3
Query:  241 FKLEHPLERRQAESARIREKYPDRIPVIVEKAERSD-IPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKN-ILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 576
            FK    L  RQ E A IR K+P++IPV+VE+  R   +P +DK K+LVP +LT+ QF+ ++R R+ L A +A ++ V N  L   +A M+ IY + KDEDGF+YMTY+ + TFG
Sbjct:   13 FKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG 126          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3B_HUMAN (Microtubule-associated proteins 1A/1B light chain 3B OS=Homo sapiens GN=MAP1LC3B PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 5.990e-18
Identity = 43/118 (36.44%), Postives = 76/118 (64.41%), Query Frame = -3
Query:  241 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 588
            ++ +FK     E+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3B_RAT (Microtubule-associated proteins 1A/1B light chain 3B OS=Rattus norvegicus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.022e-17
Identity = 42/120 (35.00%), Postives = 77/120 (64.17%), Query Frame = -3
Query:  235 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 588
            ++ +FK     E+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  +DEDGFLYM Y+ + TFG +
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTA 122          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3B_MOUSE (Microtubule-associated proteins 1A/1B light chain 3B OS=Mus musculus GN=Map1lc3b PE=1 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 1.022e-17
Identity = 42/120 (35.00%), Postives = 77/120 (64.17%), Query Frame = -3
Query:  235 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFGAS 588
            ++ +FK     E+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  +DEDGFLYM Y+ + TFG +
Sbjct:    3 SEKTFKQRRSFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESERDEDGFLYMVYASQETFGTA 122          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3B_BOVIN (Microtubule-associated proteins 1A/1B light chain 3B OS=Bos taurus GN=MAP1LC3B PE=1 SV=4)

HSP 1 Score: 90.5077 bits (223), Expect = 2.276e-17
Identity = 42/118 (35.59%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  241 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 588
            ++ +FK     E+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +  +YE  KDEDGFLYM Y+ + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPICEVYESEKDEDGFLYMVYASQETFG 120          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MP3B2_HUMAN (Microtubule-associated proteins 1A/1B light chain 3 beta 2 OS=Homo sapiens GN=MAP1LC3B2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.622e-17
Identity = 42/118 (35.59%), Postives = 75/118 (63.56%), Query Frame = -3
Query:  241 AKSSFKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVK-NILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 588
            ++ +FK     E+R  +   IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + + ++R+R++L+A +A F+ V  + +   +  +S +YE  KDEDGFLYM  + + TFG
Sbjct:    3 SEKTFKQRRTFEQRVEDVRLIREQHPTKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDEDGFLYMVCASQETFG 120          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3A_BOVIN (Microtubule-associated proteins 1A/1B light chain 3A OS=Bos taurus GN=MAP1LC3A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.130e-16
Identity = 43/114 (37.72%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  241 FKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 576
            FK       R  E  +IRE++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIREQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3A_RAT (Microtubule-associated proteins 1A/1B light chain 3A OS=Rattus norvegicus GN=Map1lc3a PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.516e-16
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = -3
Query:  241 FKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 576
            FK       R  E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120          
The following BLAST results are available for this feature:
BLAST of DY305929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8D_ORYSJ6.821e-3054.24Autophagy-related protein 8D OS=Oryza sativa subsp... [more]
ATG8H_ARATH2.592e-2953.98Autophagy-related protein 8h OS=Arabidopsis thalia... [more]
MLP3C_HUMAN7.559e-2146.49Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_HUMAN5.990e-1836.44Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_RAT1.022e-1735.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_MOUSE1.022e-1735.00Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3B_BOVIN2.276e-1735.59Microtubule-associated proteins 1A/1B light chain ... [more]
MP3B2_HUMAN6.622e-1735.59Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_BOVIN1.130e-1637.72Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_RAT2.516e-1636.84Microtubule-associated proteins 1A/1B light chain ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAM2DF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305929 ID=DY305929; Name=DY305929; organism=Citrus sinensis; type=EST; length=1268bp
AATCCAACAGTACCTGTATTAACTTGCTCATCCAATATGAAATCACGAAT
ATTTACTGCAACAAATAAGATAAAGAGGAGTAACAATAGATCCAAACTTT
AAGAAGGGGCTGAGTCCAGGAAGATCATGCTTTCCAAGTGCTCCCTCAGT
TGAAAGCAAATAGCAAAGGATTTACATATTTCCATCAAGTCTTTTCAGAG
TTAATCTACAGAAGTTCAGTTGATTCCCTTAGAAAGATGCCCCGAATGTG
TTCTCCCCACTGTAAGTCATGTAAAGGAAGCCATCCTCATCTTTGTTTTC
CTCATAAATTGCAGACATCATTGCAGCAGTGGGTGGCAAAATGTTCTTGA
CAAATATGAATATGGCCTTCTCAGCACTGAGCTTTATCCTCTTCCGGACC
ACATAAACAAATTGTCCAACAGTCAGATCAGCAGGAACCAGGTATTTTTT
TTTGTCAATATCAGGTATGTCACTCCTTTCAGCCTTCTCCACAATCACTG
GTATTCTATCAGGATACTTCTCCCTGATACGGGCAGATTCAGCCTGCCTC
CTTTCGAGTGGGTGTTCAAGCTTGAAGGAGCTCTTGGCCATAGCTTCTCC
TTGTTCTTTCTACTGCTTCCAAGGGGAAAATGAATATGAATCGACGGATT
AAAATAAATCCTCGTGCCGAATTCGGCACGAGGCTTCAAAGCCCTTACGA
AATGCCGCAAGGAGATTACATAGAGCTTCACAGGAAGCGAAATGGCTACC
GTCTCGATCACTTCGAGCGCAAGCGCAAGAAGGAGGCGCGTGAATTCCAT
AACCGCTTCGAAATTGCCCAAAAAGGCTTTGGGTATTAAGGGCAAGATGT
TTGCTAAAAAACCCCTTTGCTGAAAAGGCTCCTCATTGAAAAAACTTTGG
CTTATCCTTGAAGAATCATCAAGTCCTAAAAAAGGTGGATGAATAAGTTT
CAAGAAGGGTCCTTTTCCCTGCTTTTTTGTTTTGTTCGTGAAACCCCAAA
AAAAAACCGAAAGTTGCTTTAACCCAAAAATAAAAAACAAAAAAAAAAAA
AAAAAAAAGCTTGGAAAAAGGGGGAAAGTCACCCCTTTCCCCCACGGTTT
TGGCCCCCCCTATCGGAAAAAAAAAAGAAATTGTTTTTTTAATTCTTTCA
AAAAATTTCTGGTAAACACCAAAAAAAACACCCCACCCCAAGTTGGAGAA
AAAAAAAAAGGAGGGGTCCCCCCACAAAGGGCCCCCCCCCCCTATTTTTT
TTTTTTTTTTGGAAGCCC
back to top