DY305929

Overview
NameDY305929
Unique NameDY305929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1268
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3A_MOUSE (Microtubule-associated proteins 1A/1B light chain 3A OS=Mus musculus GN=Map1lc3a PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 2.516e-16
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = -3 
Query:  241 FKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 576
            FK       R  E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
[Close]
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: MLP3A_HUMAN (Microtubule-associated proteins 1A/1B light chain 3A OS=Homo sapiens GN=MAP1LC3A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 2.516e-16
Identity = 42/114 (36.84%), Postives = 73/114 (64.04%), Query Frame = -3 
Query:  241 FKLEHPLERRQAESARIREKYPDRIPVIVEKAE-RSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 576
            FK       R  E  +IR+++P +IPVI+E+ +    +P +DK K+LVP  + + + V ++R+R++L+  +A F+ V ++ +   +  ++ IYE+ KDEDGFLYM Y+ + TFG
Sbjct:    7 FKQRRSFADRCKEVQQIRDQHPSKIPVIIERYKGEKQLPVLDKTKFLVPDHVNMSELVKIIRRRLQLNPTQAFFLLVNQHSMVSVSTPIADIYEQEKDEDGFLYMVYASQETFG 120
[Close]
BLAST of DY305929 vs. ExPASy Swiss-Prot
Match: LGG2_CAEEL (Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.606e-16
Identity = 43/116 (37.07%), Postives = 73/116 (62.93%), Query Frame = -3 
Query:  241 SFKLEHPLERRQAESARIREKYPDRIPVIVEK--AERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFV-KNILPPTAAMMSAIYEENKDEDGFLYMTYSGENTFG 579
            SFK   P   RQ +   IR + P+++PVI+E+   ERS +P +D+ K+LVP  +TV + + +VR+R++L  ++A F+ V +  +   +  MS +Y + +D DGF+YM Y+ +  FG
Sbjct:   16 SFKERRPFHERQKDVEEIRSQQPNKVPVIIERFDGERS-LPLMDRCKFLVPEHITVAELMSIVRRRLQLHPQQAFFLLVNERSMVSNSMSMSNLYSQERDPDGFVYMVYTSQPAFG 130
The following BLAST results are available for this feature:
BLAST of DY305929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
MLP3A_MOUSE2.516e-1636.84Microtubule-associated proteins 1A/1B light chain ... [more]
MLP3A_HUMAN2.516e-1636.84Microtubule-associated proteins 1A/1B light chain ... [more]
LGG2_CAEEL5.606e-1637.07Protein lgg-2 OS=Caenorhabditis elegans GN=lgg-2 P... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF12RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305929 ID=DY305929; Name=DY305929; organism=Citrus sinensis; type=EST; length=1268bp
AATCCAACAGTACCTGTATTAACTTGCTCATCCAATATGAAATCACGAAT
ATTTACTGCAACAAATAAGATAAAGAGGAGTAACAATAGATCCAAACTTT
AAGAAGGGGCTGAGTCCAGGAAGATCATGCTTTCCAAGTGCTCCCTCAGT
TGAAAGCAAATAGCAAAGGATTTACATATTTCCATCAAGTCTTTTCAGAG
TTAATCTACAGAAGTTCAGTTGATTCCCTTAGAAAGATGCCCCGAATGTG
TTCTCCCCACTGTAAGTCATGTAAAGGAAGCCATCCTCATCTTTGTTTTC
CTCATAAATTGCAGACATCATTGCAGCAGTGGGTGGCAAAATGTTCTTGA
CAAATATGAATATGGCCTTCTCAGCACTGAGCTTTATCCTCTTCCGGACC
ACATAAACAAATTGTCCAACAGTCAGATCAGCAGGAACCAGGTATTTTTT
TTTGTCAATATCAGGTATGTCACTCCTTTCAGCCTTCTCCACAATCACTG
GTATTCTATCAGGATACTTCTCCCTGATACGGGCAGATTCAGCCTGCCTC
CTTTCGAGTGGGTGTTCAAGCTTGAAGGAGCTCTTGGCCATAGCTTCTCC
TTGTTCTTTCTACTGCTTCCAAGGGGAAAATGAATATGAATCGACGGATT
AAAATAAATCCTCGTGCCGAATTCGGCACGAGGCTTCAAAGCCCTTACGA
AATGCCGCAAGGAGATTACATAGAGCTTCACAGGAAGCGAAATGGCTACC
GTCTCGATCACTTCGAGCGCAAGCGCAAGAAGGAGGCGCGTGAATTCCAT
AACCGCTTCGAAATTGCCCAAAAAGGCTTTGGGTATTAAGGGCAAGATGT
TTGCTAAAAAACCCCTTTGCTGAAAAGGCTCCTCATTGAAAAAACTTTGG
CTTATCCTTGAAGAATCATCAAGTCCTAAAAAAGGTGGATGAATAAGTTT
CAAGAAGGGTCCTTTTCCCTGCTTTTTTGTTTTGTTCGTGAAACCCCAAA
AAAAAACCGAAAGTTGCTTTAACCCAAAAATAAAAAACAAAAAAAAAAAA
AAAAAAAAGCTTGGAAAAAGGGGGAAAGTCACCCCTTTCCCCCACGGTTT
TGGCCCCCCCTATCGGAAAAAAAAAAGAAATTGTTTTTTTAATTCTTTCA
AAAAATTTCTGGTAAACACCAAAAAAAACACCCCACCCCAAGTTGGAGAA
AAAAAAAAAGGAGGGGTCCCCCCACAAAGGGCCCCCCCCCCCTATTTTTT
TTTTTTTTTTGGAAGCCC
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