DY305927

Overview
NameDY305927
Unique NameDY305927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC2_BOVIN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Bos taurus GN=SLC25A25 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 4.970e-17
Identity = 65/226 (28.76%), Postives = 106/226 (46.90%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRL 662
            ++   APL+ ++  M V     N   I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     KI    G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+PL + R R+
Sbjct:  200 SRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLIGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCARKILAREGMAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRM 405          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2542_HUMAN (Solute carrier family 25 member 42 OS=Homo sapiens GN=SLC25A42 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 4.970e-17
Identity = 63/239 (26.36%), Postives = 110/239 (46.03%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGSKNISGN-----FIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTT-------AQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            K  +APL+  RT+++  V SK  S              +G+  LW GN   M+R++P  AI+    E  KR + +       A   W     P++  G L+ + + S                    +PL++++ R+ V+  ++Y ++     +I +E G+   Y G  PT++G++PY+   +F YETLK  +     +R     E +  GA AG    + S+PL+V R+R+    + G
Sbjct:   48 KTAVAPLD--RTKIIFQVSSKRFSAKEAFRVLYYTYLNEGFLSLWRGNSATMVRVVPYAAIQFSAHEEYKRILGSYYGFRGEALPPW-----PRLFAGALAGTTAAS------------------LTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYHGFMPTVLGVIPYAGLSFFTYETLKSLHREYSGRRQPYPFERMIFGACAGLIGQSASYPLDVVRRRMQTAGVTG 261          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC2_RAT (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Rattus norvegicus GN=Slc25a25 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.491e-17
Identity = 64/226 (28.32%), Postives = 107/226 (47.35%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRL 662
            ++   APL+ ++  M V     N   I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     +I  + G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+PL + R R+
Sbjct:  200 SRTCTAPLDRLKVLMQVHASRSNNMCIIGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCAKRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRM 405          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC2_HUMAN (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Homo sapiens GN=SLC25A25 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 6.491e-17
Identity = 64/226 (28.32%), Postives = 106/226 (46.90%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRL 662
            ++   APL+ ++  M V     N   I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     +I    G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+PL + R R+
Sbjct:  200 SRTCTAPLDRLKVLMQVHASRSNNMGIVGGFTQMIREGGARSLWRGNGINVLKIAPESAIKFMAYEQIKRLVGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCARRILAREGVAAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQHYAVNSADPGVFVLLACGTMSSTCGQLASYPLALVRTRM 405          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC2_MOUSE (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Mus musculus GN=Slc25a25 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 8.477e-17
Identity = 64/226 (28.32%), Postives = 107/226 (47.35%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCN--SKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRL 662
            ++   APL+ ++  M V     N   I G F ++I + G + LW GNGIN+L+I P  AI+   +E +KR + + QE     E  ++  G L+ + + S I                  +P+EVLK R+ +     Y  +     +I  + G+ AFY G  P ++G++PY+     +YETLK  +    + N        +LA G ++       S+PL + R R+
Sbjct:  200 SRTCTAPLDRLKVLMQVHASRSNNMCIVGGFTQMIREGGAKSLWRGNGINVLKIAPESAIKFMAYEQMKRLVGSDQETLRIHE--RLVAGSLAGAIAQSSI------------------YPMEVLKTRMALRKTGQYSGMLDCARRILAKEGVAAFYKGYIPNMLGIIPYAGIDLAVYETLKNTWLQRYAVNSADPGVFVLLACGTISSTCGQLASYPLALVRTRM 405          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCM1B_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-1-B OS=Xenopus laevis GN=slc25a24-B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.889e-16
Identity = 65/222 (29.28%), Postives = 108/222 (48.65%), Query Frame = 3
Query:   18 APLETIRTRMVV--GVGSKNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHD-VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST----ISFPLEVARKRL 662
            APL+ ++  M V    G+ NI     +++++ G + LW GNG+N+++I P  A++   +E  K+  T+   K    E  +   G L+ + + + I                  +P+EVLK RL V     Y  +     KI ++ GI AFY G  P ++G++PY+     +YETLK  +  +  K S N   ++ LG   G  +ST     S+PL + R R+
Sbjct:  213 APLDRLKVMMQVHGSKGNSNIITGLKQMVKEGGIRSLWRGNGVNVIKIAPETAMKFWAYEQYKKLFTSESGKLGTAE--RFVAGSLAGATAQTSI------------------YPMEVLKTRLAVGRTGQYSGMFDCAKKIMQKEGIRAFYKGYIPNILGIIPYAGIDLAIYETLKNYWLQNHAKDSANPGVLVLLG--CGTASSTCGQLASYPLALIRTRM 412          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: YP011_YEAST (Uncharacterized mitochondrial carrier YPR011C OS=Saccharomyces cerevisiae GN=YPR011C PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.221e-16
Identity = 60/248 (24.19%), Postives = 116/248 (46.77%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGS----KNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV--------------SHDVYPSLSIAISKIYK-EGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEM--LALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            ++ V++P E ++  + V   +    + I  +  +V  ++G +GL+ GNG+N +RI P  A++   +E  K+ +        QE+    Q                          S +A +PL+++K RL++              S    P +   +S+ Y+ EGG+   Y G+ PT +G++PY    + +YE L++   NS + +   +  +  L +GA++G  A TI++P ++ R+R  V  + G
Sbjct:   36 SRTVVSPFERVKILLQVQSSTTSYNRGIFSSIRQVYHEEGTKGLFRGNGLNCIRIFPYSAVQFVVYEACKKKLFHVNGNNGQEQLTNTQ---------------RLFSGALCGGCSVVATYPLDLIKTRLSIQTANLSSLNRSKAKSISKPPGIWQLLSETYRLEGGLRGLYRGVWPTSLGVVPYVALNFAVYEQLREFGVNSSDAQPSWKSNLYKLTIGAISGGVAQTITYPFDLLRRRFQVLAMGG 268          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: SCMC2_XENLA (Calcium-binding mitochondrial carrier protein SCaMC-2 OS=Xenopus laevis GN=slc25a25 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 3.221e-16
Identity = 64/226 (28.32%), Postives = 105/226 (46.46%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKN---ISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTV-SHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRP--EMLALGALAGFTASTISFPLEVARKRL 662
            ++   APL+ ++  M V     N   I G F  +I + G++ LW GNGIN+++I P  AI+   +E +KR + + QE     E  +   G L+   + S I                  +P+EVLK R+ +     Y  +     KI  + G+ AFY G  P ++G++PY+     +YETLK  +       S +     +LA G ++       S+PL + R R+
Sbjct:  245 SRTCTAPLDRLKVLMQVHASRSNNMSILGGFTHMIREGGFRSLWRGNGINVIKIAPESAIKFMAYEQIKRIIGSNQETLGIHE--RFVAGSLAGVIAQSSI------------------YPMEVLKTRMALRKTGQYQGVLDCGKKILLQEGLSAFYKGYVPNMLGIIPYAGIDLAVYETLKNAWLQRYATSSADPGVFVLLACGTVSSTCGQLASYPLALVRTRM 450          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2542_RAT (Solute carrier family 25 member 42 OS=Rattus norvegicus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.495e-16
Identity = 62/239 (25.94%), Postives = 109/239 (45.61%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGSKNISGN-----FIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAM-------TTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            K  +APL+  RT+++  V SK  S              +G+  LW GN   M+R+IP  AI+    E  KR +         A   W     P++  G L+ + + S                    +PL++++ R+ V+  ++Y ++     +I +E G+   Y G +PT++G++PY+   +F YE+LK  +     +      E +  GA AG    + S+PL+V R+R+    + G
Sbjct:   48 KTAVAPLD--RTKIIFQVSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPW-----PRLLAGALAGTTAAS------------------LTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQTAGVTG 261          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2542_MOUSE (Solute carrier family 25 member 42 OS=Mus musculus GN=Slc25a42 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.495e-16
Identity = 62/239 (25.94%), Postives = 109/239 (45.61%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGSKNISGN-----FIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAM-------TTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVS-HDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVGPLQG 683
            K  +APL+  RT+++  V SK  S              +G+  LW GN   M+R+IP  AI+    E  KR +         A   W     P++  G L+ + + S                    +PL++++ R+ V+  ++Y ++     +I +E G+   Y G +PT++G++PY+   +F YE+LK  +     +      E +  GA AG    + S+PL+V R+R+    + G
Sbjct:   48 KTAVAPLD--RTKIIFQVSSKRFSAKEAFRLLYFTYLNEGFLSLWRGNSATMVRVIPYAAIQFSAHEEYKRILGHYYGFRGEALPPW-----PRLLAGALAGTTAAS------------------LTYPLDLVRARMAVTPKEMYSNIFHVFIRISREEGLKTLYFGFTPTVLGVIPYAGLSFFTYESLKSLHREYSGRPQPYPFERMVFGACAGLIGQSASYPLDVVRRRMQTAGVTG 261          
The following BLAST results are available for this feature:
BLAST of DY305927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SCMC2_BOVIN4.970e-1728.76Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_HUMAN4.970e-1726.36Solute carrier family 25 member 42 OS=Homo sapiens... [more]
SCMC2_RAT6.491e-1728.32Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_HUMAN6.491e-1728.32Calcium-binding mitochondrial carrier protein SCaM... [more]
SCMC2_MOUSE8.477e-1728.32Calcium-binding mitochondrial carrier protein SCaM... [more]
SCM1B_XENLA1.889e-1629.28Calcium-binding mitochondrial carrier protein SCaM... [more]
YP011_YEAST3.221e-1624.19Uncharacterized mitochondrial carrier YPR011C OS=S... [more]
SCMC2_XENLA3.221e-1628.32Calcium-binding mitochondrial carrier protein SCaM... [more]
S2542_RAT5.495e-1625.94Solute carrier family 25 member 42 OS=Rattus norve... [more]
S2542_MOUSE5.495e-1625.94Solute carrier family 25 member 42 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305927 ID=DY305927; Name=DY305927; organism=Citrus sinensis; type=EST; length=1250bp
GGACTAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACGAGAATGGTG
GTTGGTGTTGGATCCAAAAATATTTCTGGTAATTTCATTGAAGTAATTGA
GCAGCAGGGTTGGCAAGGACTATGGGCTGGCAATGGAATTAATATGCTCC
GAATAATCCCCACCCAGGCAATTGAGCTTGGAACATTTGAGTGTGTCAAA
CGAGCTATGACTACGGCACAAGAGAAATGGAGTCAGGAGGAATGCCCAAA
AGTGCAAATTGGTCCTCTCAGTTTGAGTTTTTCTCTCTCCTGGATTTCTC
CTGTTGCCGTGGCTGGTGCAGCTGCTGGAGTTGTTAGCACGCTTGCGTGC
CATCCTCTTGAAGTATTGAAGGATCGGTTGACTGTAAGTCATGATGTGTA
CCCTAGTTTGAGCATTGCAATTAGCAAAATATATAAGGAGGGTGGAATTG
GTGCTTTTTATGCCGGTATTTCACCTACGTTGATTGGCATGCTCCCGTAT
AGTACTTGTTACTACTTTATGTATGAGACATTGAAAAAGAAATACTGCAA
TTCAAAGAATAAGAGGTCGCTAAACCGTCCGGAGATGCTTGCATTGGGAG
CTCTTGCAGGTTTTACAGCTAGCACCATCAGCTTTCCCTTGGAGGTTGCT
AGGAAACGGCTTATGGTAGGACCTTTGCAGGGTAAATGTCCACCCCACAT
GGCAGCGGCACTTGCTGAAATCATTCTGGAAGAGGGTTTGATGGGCCTTT
ACCAGAATTGGGTGCAAGCTGTTTAAGGGTCATCCTTTCCTCAGAAAATC
CTGGAATGTTTACAAACCTTGAAAGAAATTACTGCCTCCCCTAAACCCTC
GTCCTATTTAAAACAAAAATTAGGTAATTTTCCTAATACCTATTGGGCAA
GTTTCTTGTATAAAGCCCCGCCTTTTACCATATAAAAAATGTGTTTCTTG
TATTAAAATTGAGGCAAGATTTTATTATTAGGTATTTTGTGTGCGCCCCG
ATTTTTTGTCTCCCGCCGTGCCTCTGGCGTGAGGTAGAATTTTCGTTATG
TTTCCGTATTTGATAGTAGCACTAATATAAGATGTGCCGGTGCTGCCAGG
GATGTTCCTCTCTCTATAGGTTCCGAAATAAGGAGAGTAAAAACTAGATA
GANCACAAAGGATACAACGTGTATTTAGAAAGTTGAAGTTGATGTGAATA
TTAGAATGCGTCTTGTTGGTTAATGTANATGGAATATATATTNTGAATAT
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