DY305927

Overview
NameDY305927
Unique NameDY305927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1250
Libraries
Library NameType
SLHcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: CMC3_CAEBR (Probable calcium-binding mitochondrial carrier CBG00135 OS=Caenorhabditis briggsae GN=CBG00135 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.822e-12
Identity = 61/236 (25.85%), Postives = 104/236 (44.07%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKNISG--NFIEVIEQQGW-QGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH--DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFPLEVARKRLMVGPLQGK 686
            ++   AP + I+  + V     N  G  + + ++  +G  +  W GNGIN+++I P  A++  +++ +KR        W QE     ++      F+ S               S  A +P+EV+K RL +     +   +     K+Y + GI  FY G  P L+G++PY+     +YETLK   C ++       P +LAL   G  +       S+PL + R RL    +  K
Sbjct:  259 SRTCTAPFDRIKVYLQVNSTKTNKLGVVSCVHLLHAEGGLKSFWRGNGINVIKIAPESAMKFMSYDQIKR--------WIQEYKGGAELTTYERLFAGS----------SAGAISQTAIYPMEVMKTRLALRRTGQLDRGMIHFAHKMYDKEGIRCFYKGYLPNLLGIIPYAGIDLTVYETLKS--CYTQYYTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRLQARAISPK 474          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: CMC2_CAEEL (Putative calcium-binding mitochondrial carrier F55A11.4 OS=Caenorhabditis elegans GN=F55A11.4 PE=5 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 3.686e-12
Identity = 64/231 (27.71%), Postives = 104/231 (45.02%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKNISG--NFIEVIEQQGW-QGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQ---IGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDVYPSLSIA--ISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFPLEVARKRL 662
            ++   AP + I+  + V     N  G  + ++++  +G  +  W GNGIN+++I P  AI+   ++ +KR +   Q+K   EE    +    G  + + S S I                  +P+EV+K RL +         I     K+Y + GI  FY G  P LIG++PY+     +YETLK+ Y       S + P +LAL   G  +       S+P  + R RL
Sbjct:  262 SRTCTAPFDRIKVYLQVNSSKTNRLGVMSCLKLLHAEGGIKSFWRGNGINVIKIAPESAIKFMCYDQLKRLI---QKKKGNEEISTFERLCAGSAAGAISQSTI------------------YPMEVMKTRLALRKTGQLDRGIIHFAHKMYTKEGIRCFYKGYLPNLIGIIPYAGIDLAIYETLKRTYVRYYETNS-SEPGVLALLACGTCSSTCGQLSSYPFALVRTRL 470          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: CMC3_CAEEL (Probable calcium-binding mitochondrial carrier F17E5.2 OS=Caenorhabditis elegans GN=F17E5.2 PE=2 SV=4)

HSP 1 Score: 72.7886 bits (177), Expect = 4.814e-12
Identity = 60/236 (25.42%), Postives = 103/236 (43.64%), Query Frame = 3
Query:    3 TKAVLAPLETIRTRMVVGVGSKNISG--NFIEVIEQQGW-QGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH--DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLAL---GALAGFTASTISFPLEVARKRLMVGPLQGK 686
            ++   AP + I+  + V     N  G  + + ++  +G  +  W GNGIN+++I P  A++   ++ +KR        W QE     ++  +    + S               S  A +P+EV+K RL +     +   +     K+Y + GI  FY G  P L+G++PY+     +YE+LK  Y  +K       P +LAL   G  +       S+PL + R RL    +  K
Sbjct:  258 SRTCTAPFDRIKVYLQVNSTKTNKLGVVSCVHLLHAEGGIKSFWRGNGINVIKIAPESAMKFMCYDQIKR--------WMQEYKGGAELSTIERLLAGS----------SAGAISQTAIYPMEVMKTRLALRRTGQLDKGMFHFAHKMYTKEGIKCFYKGYLPNLLGIIPYAGIDLTVYESLKSMY--TKYYTEHTEPGVLALLACGTCSSTCGQLASYPLALVRTRLQARAISPK 473          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: TPC_PONAB (Mitochondrial thiamine pyrophosphate carrier OS=Pongo abelii GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.211e-12
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  336 STLACHPLEVLKDRLTVSHD--VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKY---CNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVG 671
            +TL  HP++VL+ R     +  VY +L  A+  +Y+  G   FY G++PTLI + PY+   +  Y +LK  Y     ++ K++ N   +L  G+ AG  + T+++PL++ +KRL VG
Sbjct:  132 ATLTVHPVDVLRTRFAAQGEPKVYNTLCHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLC-GSGAGVISKTLTYPLDLFKKRLQVG 247          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: TPC_MACFA (Mitochondrial thiamine pyrophosphate carrier OS=Macaca fascicularis GN=SLC25A19 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.211e-12
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  336 STLACHPLEVLKDRLTVSHD--VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKY---CNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVG 671
            +TL  HP++VL+ R     +  VY +L  A+  +Y+  G   FY G++PTLI + PY+   +  Y +LK  Y     ++ K++ N   +L  G+ AG  + T+++PL++ +KRL VG
Sbjct:  132 ATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAMPAEGKKNENLQNLLC-GSGAGVISKTLTYPLDLFKKRLQVG 247          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: TPC_HUMAN (Mitochondrial thiamine pyrophosphate carrier OS=Homo sapiens GN=SLC25A19 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 8.211e-12
Identity = 40/117 (34.19%), Postives = 68/117 (58.12%), Query Frame = 3
Query:  336 STLACHPLEVLKDRLTVSHD--VYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKY---CNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMVG 671
            +TL  HP++VL+ R     +  VY +L  A+  +Y+  G   FY G++PTLI + PY+   +  Y +LK  Y     ++ K++ N   +L  G+ AG  + T+++PL++ +KRL VG
Sbjct:  132 ATLTVHPVDVLRTRFAAQGEPKVYNTLRHAVGTMYRSEGPQVFYKGLAPTLIAIFPYAGLQFSCYSSLKHLYKWAIPAEGKKNENLQNLLC-GSGAGVISKTLTYPLDLFKKRLQVG 247          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: TPC1_DEBHA (Mitochondrial thiamine pyrophosphate carrier 1 OS=Debaryomyces hansenii GN=TPC1 PE=3 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 2.389e-11
Identity = 54/226 (23.89%), Postives = 107/226 (47.35%), Query Frame = 3
Query:    6 KAVLAPLETIRTRMVVGVGS----KNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDV-YPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTASTISFPLEVARKRLMV 668
            + ++APL+TI+ R+ + +      K  S  F+ + + +G + LW GN    +  I   AI+  ++  + +A++  ++                  F++S  +            ST   +P ++L+ RL  + +  + S+S  I  IY+  GIG F  G++P L+ +   +   ++ YE L +++ N  N + +        G +AG TA  ++FPL+  RKR+ +
Sbjct:   38 RGIIAPLDTIKIRLQLQIQGYDTYKGASKTFVSICKNEGVKALWKGNVPAEILYILYGAIQFTSYSALSKALSEFEKNNRN-------------LFTISNSTHSLIAGSGSGLASTFFTYPFDLLRTRLAANSEAHFLSMSSTIKSIYEMHGIGGFCKGLTPGLLSVASSTGLMFWSYE-LAREFSN--NYKDVIPFLEGFCGFIAGATAKGLTFPLDTLRKRIQM 247          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: CMC1_YEAST (Calcium-binding mitochondrial carrier SAL1 OS=Saccharomyces cerevisiae GN=SAL1 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 3.120e-11
Identity = 45/196 (22.96%), Postives = 96/196 (48.98%), Query Frame = 3
Query:  102 QQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPE---------MLALGALAGFTASTISFPLEVARKRL 662
            Q G +  + GNG+N++++ P  +I+ G+FE  K+ MT  +     ++  K       ++  L+ ++              + C PL+    +L  ++ ++ +       +++EGG+  FY G++  ++G+ PY+      +  LKK Y  +K  ++LN P+         +L +GA +G   +++ +P+ + R RL
Sbjct:  298 QGGIKAFYVGNGLNVIKVFPESSIKFGSFEVTKKIMTKLEGCRDTKDLSKFS---TYIAGGLAGMAAQFSVYPIDTLKFRVQCAPLDT---KLKGNNLLFQT----AKDMFREGGLRLFYRGVTVGIVGIFPYAALDLGTFSALKKWYI-AKQAKTLNLPQDQVTLSNLVVLPMGAFSGTVGASVVYPINLLRTRL 482          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: MFRN_DICDI (Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.075e-11
Identity = 58/222 (26.13%), Postives = 101/222 (45.50%), Query Frame = 3
Query:   21 PLETIRTRM-VVGVGSKNISGNFI--EVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSHDVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKK---KYCNSKN--KRSLNRPEMLALGALAGFTASTISFPLEVARKRL 662
            P++TI+T +  +  G+   S   I   +I+Q G  GL+ G         P+ A+    +E +K          S E+   +++G      +++               S     P++V+K RL +    Y  L+    +I+ + GI  FY+G + TL+  +PY+  Y+  YE+LKK    + N+KN  +RS    + L  G  AG  A+  + P +V + RL
Sbjct:   36 PIDTIKTHIQAIKPGAMQTSSLQITKHIIQQHGITGLFRGLTAVAAGAAPSHAVHFSIYELLKFKFIG-----SDEDHHPIKVGIAGAIATMT---------------SEAVASPMDVVKQRLQLQITDYKGLTDCTKRIWVKEGIRGFYSGYTTTLVMNVPYNIVYFASYESLKKIIQPWFNNKNPEERSYQLIDHLVAGGGAGMLAAAFTNPFDVVKTRL 237          
BLAST of DY305927 vs. ExPASy Swiss-Prot
Match: S2541_MOUSE (Solute carrier family 25 member 41 OS=Mus musculus GN=Slc25a41 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 6.951e-11
Identity = 63/224 (28.12%), Postives = 99/224 (44.20%), Query Frame = 3
Query:   18 APLETIRTRMVVGVGS---KNISGNFIEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTTAQEKWSQEECPKVQIGPLSLSFSLSWISPXXXXXXXXXXXSTLACHPLEVLKDRLTVSH-DVYPSLSIAISKIYKEGGIGAFYAGISPTLIGMLPYSTCYYFMYETLKKKYCNSKNKRSLNRPEMLALGALAGFTAST-----ISFPLEVARKRL 662
            APL+  R  M V       +N+      ++++ G + LW GNGIN+L+I P  AI+    E  K            +E  +V  G L+++ S + I                  +P+EVLK RLT+     Y  L     +I +  G  A Y G  P ++G++PY+     +YE L+  +   K  R +  P    L +L+  T ST      S+PL + R R+
Sbjct:   48 APLDRARVYMQVYSSKSNFRNLLSGLRSLVQEGGVRSLWRGNGINVLKIAPEYAIKFSVCEQSKNFFYGVHSSQLFQE--RVVAGSLAVAVSQTLI------------------NPMEVLKTRLTLRFTGQYKGLLDCARQILERDGTRALYRGYLPNMLGIIPYACTDLAVYELLQCLW--QKLGRDMKDPS--GLVSLSSVTLSTTCGQMASYPLTLVRTRM 247          
The following BLAST results are available for this feature:
BLAST of DY305927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
CMC3_CAEBR2.822e-1225.85Probable calcium-binding mitochondrial carrier CBG... [more]
CMC2_CAEEL3.686e-1227.71Putative calcium-binding mitochondrial carrier F55... [more]
CMC3_CAEEL4.814e-1225.42Probable calcium-binding mitochondrial carrier F17... [more]
TPC_PONAB8.211e-1234.19Mitochondrial thiamine pyrophosphate carrier OS=Po... [more]
TPC_MACFA8.211e-1234.19Mitochondrial thiamine pyrophosphate carrier OS=Ma... [more]
TPC_HUMAN8.211e-1234.19Mitochondrial thiamine pyrophosphate carrier OS=Ho... [more]
TPC1_DEBHA2.389e-1123.89Mitochondrial thiamine pyrophosphate carrier 1 OS=... [more]
CMC1_YEAST3.120e-1122.96Calcium-binding mitochondrial carrier SAL1 OS=Sacc... [more]
MFRN_DICDI4.075e-1126.13Mitoferrin OS=Dictyostelium discoideum GN=mcfF PE=... [more]
S2541_MOUSE6.951e-1128.13Solute carrier family 25 member 41 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAM2DF08RM1 SLH Citrus sinensis cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY305927 ID=DY305927; Name=DY305927; organism=Citrus sinensis; type=EST; length=1250bp
GGACTAAAGCTGTTCTTGCTCCTCTTGAGACCATCAGGACGAGAATGGTG
GTTGGTGTTGGATCCAAAAATATTTCTGGTAATTTCATTGAAGTAATTGA
GCAGCAGGGTTGGCAAGGACTATGGGCTGGCAATGGAATTAATATGCTCC
GAATAATCCCCACCCAGGCAATTGAGCTTGGAACATTTGAGTGTGTCAAA
CGAGCTATGACTACGGCACAAGAGAAATGGAGTCAGGAGGAATGCCCAAA
AGTGCAAATTGGTCCTCTCAGTTTGAGTTTTTCTCTCTCCTGGATTTCTC
CTGTTGCCGTGGCTGGTGCAGCTGCTGGAGTTGTTAGCACGCTTGCGTGC
CATCCTCTTGAAGTATTGAAGGATCGGTTGACTGTAAGTCATGATGTGTA
CCCTAGTTTGAGCATTGCAATTAGCAAAATATATAAGGAGGGTGGAATTG
GTGCTTTTTATGCCGGTATTTCACCTACGTTGATTGGCATGCTCCCGTAT
AGTACTTGTTACTACTTTATGTATGAGACATTGAAAAAGAAATACTGCAA
TTCAAAGAATAAGAGGTCGCTAAACCGTCCGGAGATGCTTGCATTGGGAG
CTCTTGCAGGTTTTACAGCTAGCACCATCAGCTTTCCCTTGGAGGTTGCT
AGGAAACGGCTTATGGTAGGACCTTTGCAGGGTAAATGTCCACCCCACAT
GGCAGCGGCACTTGCTGAAATCATTCTGGAAGAGGGTTTGATGGGCCTTT
ACCAGAATTGGGTGCAAGCTGTTTAAGGGTCATCCTTTCCTCAGAAAATC
CTGGAATGTTTACAAACCTTGAAAGAAATTACTGCCTCCCCTAAACCCTC
GTCCTATTTAAAACAAAAATTAGGTAATTTTCCTAATACCTATTGGGCAA
GTTTCTTGTATAAAGCCCCGCCTTTTACCATATAAAAAATGTGTTTCTTG
TATTAAAATTGAGGCAAGATTTTATTATTAGGTATTTTGTGTGCGCCCCG
ATTTTTTGTCTCCCGCCGTGCCTCTGGCGTGAGGTAGAATTTTCGTTATG
TTTCCGTATTTGATAGTAGCACTAATATAAGATGTGCCGGTGCTGCCAGG
GATGTTCCTCTCTCTATAGGTTCCGAAATAAGGAGAGTAAAAACTAGATA
GANCACAAAGGATACAACGTGTATTTAGAAAGTTGAAGTTGATGTGAATA
TTAGAATGCGTCTTGTTGGTTAATGTANATGGAATATATATTNTGAATAT
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